Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP93_RS09215 Genome accession   NZ_CP063121
Coordinates   1898781..1899497 (-) Length   238 a.a.
NCBI ID   WP_197545340.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1893781..1904497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS09195 (INP93_09190) nrdR 1893894..1894343 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP93_RS09200 (INP93_09195) recC 1894421..1897780 (-) 3360 WP_197544742.1 exodeoxyribonuclease V subunit gamma -
  INP93_RS09205 (INP93_09200) comQ 1897818..1898084 (-) 267 WP_049383247.1 DUF5374 domain-containing protein Machinery gene
  INP93_RS09210 (INP93_09205) comP 1898107..1898784 (-) 678 WP_197544743.1 DUF2572 family protein Machinery gene
  INP93_RS09215 (INP93_09210) comO 1898781..1899497 (-) 717 WP_197545340.1 PulJ/GspJ family protein Machinery gene
  INP93_RS09220 (INP93_09215) comN 1899494..1900012 (-) 519 WP_197544744.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP93_RS09225 (INP93_09220) suhB 1900213..1901013 (+) 801 WP_005695663.1 inositol-1-monophosphatase -
  INP93_RS09230 (INP93_09225) bioB 1901059..1902075 (-) 1017 WP_049366106.1 biotin synthase BioB -
  INP93_RS09235 (INP93_09230) thiQ 1902149..1902778 (-) 630 WP_197544745.1 thiamine ABC transporter ATP-binding protein -
  INP93_RS09240 (INP93_09235) thiP 1902771..1904375 (-) 1605 WP_197544746.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26604.68 Da        Isoelectric Point: 7.9298

>NTDB_id=493120 INP93_RS09215 WP_197545340.1 1898781..1899497(-) (comO) [Haemophilus parainfluenzae strain M1C130_2]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRGANQKLIEDNLVL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NADCRSAECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLTGHLAAYKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=493120 INP93_RS09215 WP_197545340.1 1898781..1899497(-) (comO) [Haemophilus parainfluenzae strain M1C130_2]
ATGAAACCATTAAAAGGTGAAACATTGGTGAGCTTATTGATTTCACTTGGCTTATCCGCTTTATTATTGTTATTGGTTGC
ACAATTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTCAAACTACAAGCAGAATTACAACGCACAA
TTCAACTCATCGGGAAAGATTTGCGTCGCGTAGGCTTTCGGGGCGCAAACCAAAAACTCATCGAGGATAATCTGGTTTTA
TTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCTGATAATGCCCCGTCAAATAGTTGTGTTTTGTTTTT
TTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCGA
AAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGCAAAATGATCGAAACCAAACAAACCTACAAAAATGCAGTA
AATGCAGATTGTCGCTCAGCAGAGTGTCAGCGAGCCTTAGCGCAATCTACTTGTAACGCTGGTGGTGGATGGACTGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATTAAACTCA
CAGGGCATCTTGCCGCATATAAGCATATTCAATATGAAACTTCGCTTGTAGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

98.319

0.609