Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP93_RS04950 Genome accession   NZ_CP063121
Coordinates   1001606..1002559 (+) Length   317 a.a.
NCBI ID   WP_065244208.1    Uniprot ID   A0A1B8QXD1
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 996606..1007559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS04930 (INP93_04930) accA 997190..998137 (-) 948 WP_197545300.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP93_RS04935 (INP93_04935) znuB 998226..999011 (-) 786 WP_049366407.1 zinc ABC transporter permease subunit ZnuB -
  INP93_RS04940 (INP93_04940) znuC 999021..999815 (-) 795 WP_197544315.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP93_RS04945 (INP93_04945) mepM 999993..1001471 (+) 1479 WP_197544316.1 murein DD-endopeptidase MepM -
  INP93_RS04950 (INP93_04950) ceuB 1001606..1002559 (+) 954 WP_065244208.1 ABC transporter permease Machinery gene
  INP93_RS04955 (INP93_04955) - 1002552..1003511 (+) 960 WP_049380439.1 iron chelate uptake ABC transporter family permease subunit -
  INP93_RS04960 (INP93_04960) - 1003502..1004263 (+) 762 WP_197544317.1 ABC transporter ATP-binding protein -
  INP93_RS04965 (INP93_04965) - 1004278..1005186 (+) 909 WP_070583059.1 siderophore ABC transporter substrate-binding protein -
  INP93_RS04970 (INP93_04970) - 1005307..1006257 (+) 951 WP_197544318.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.24 Da        Isoelectric Point: 10.2040

>NTDB_id=493113 INP93_RS04950 WP_065244208.1 1001606..1002559(+) (ceuB) [Haemophilus parainfluenzae strain M1C130_2]
MIKRRYLIFLLIVLSFISLFLGVSTVNLQGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493113 INP93_RS04950 WP_065244208.1 1001606..1002559(+) (ceuB) [Haemophilus parainfluenzae strain M1C130_2]
ATGATTAAGAGACGTTATCTGATTTTTCTTTTGATAGTGCTTTCCTTTATTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTCTAATCAGCCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCGGGTGCATCCTTGAGTATTTGTGGTTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCACCTACCACT
GCGGGCACAATGGACAGTGCAAGATTAGGCATTTTAATGGCGATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTCATCGTGTCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCATTAGTCGGGATTATGTTTGGTAATATCATCAGTTCAATTACCGCCTTTATTGCTTACAAAGAAGATTTA
TTACAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCTGGTCGCTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATTGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGATTGCTCATTGTGGCAGTGGTCTCTTCGATTATTATCGTGTCTGTTGGC
GTGATTCCTTTCTTAGGGTTAATAATCCCGAATATCGTCACACTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACGGCCTTGCTAGGCGCTGTATTTGTTTTATTTTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTTGGCAGTGGGATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B8QXD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.987

97.476

0.546