Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP93_RS02260 Genome accession   NZ_CP063121
Coordinates   445223..445891 (-) Length   222 a.a.
NCBI ID   WP_193452053.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C130_2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 440223..450891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP93_RS02260 (INP93_02260) sxy/tfoX 445223..445891 (-) 669 WP_193452053.1 TfoX/Sxy family DNA transformation protein Regulator
  INP93_RS02265 (INP93_02265) - 446121..446963 (+) 843 WP_197545017.1 patatin-like phospholipase family protein -
  INP93_RS02270 (INP93_02270) recA 447099..448154 (+) 1056 WP_111388079.1 recombinase RecA Machinery gene
  INP93_RS02275 (INP93_02275) recX 448224..448676 (+) 453 WP_197545018.1 recombination regulator RecX -
  INP93_RS02280 (INP93_02280) crcB 448651..449046 (-) 396 WP_049365038.1 fluoride efflux transporter CrcB -
  INP93_RS02285 (INP93_02285) - 449047..449865 (-) 819 WP_197545019.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25459.73 Da        Isoelectric Point: 10.2220

>NTDB_id=493103 INP93_RS02260 WP_193452053.1 445223..445891(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C130_2]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLYHKEKDMFAVWANNKVYLRAKDELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVDTLRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=493103 INP93_RS02260 WP_193452053.1 445223..445891(-) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C130_2]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTGACAAG
TAAAAATTTATTTACGGGATATGGCTTGTATCATAAAGAGAAAGATATGTTTGCGGTTTGGGCAAACAATAAGGTTTACT
TACGTGCTAAGGATGAGCTTTCGATAAAATTAAAAGGACTTGGCTGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGCATCTTGAAAGATAATGTTTTAATGAGAACCTTGATCATTCTTTC
TATCAGTCAAATCAGGAAGGAAAAATTAGATTCTGCACTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAAAGAGCTCTGAAGAAAGTGGGTATTGATAATGTTGATACCTTACGACAAATAGGCGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATTGGGGCAACTGAAGCTTTCTATTGGCGGCTTCGAGGCGCTTTAGAGAATCGTAATTG
TGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGTCTTAGTAAACTTAATGAAATACTTTCTGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(17-110)

TfoX C-terminal domain (TfoX_C)

(125-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

59.42

93.243

0.554