Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP94_RS05395 Genome accession   NZ_CP063120
Coordinates   1095125..1096078 (+) Length   317 a.a.
NCBI ID   WP_269475093.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C137_2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1090125..1101078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP94_RS05375 (INP94_05375) accA 1090713..1091660 (-) 948 WP_049369151.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP94_RS05380 (INP94_05380) znuB 1091748..1092533 (-) 786 WP_054418308.1 zinc ABC transporter permease subunit ZnuB -
  INP94_RS05385 (INP94_05385) znuC 1092543..1093337 (-) 795 WP_070591540.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP94_RS05390 (INP94_05390) mepM 1093516..1094991 (+) 1476 WP_197541738.1 murein DD-endopeptidase MepM -
  INP94_RS05395 (INP94_05395) ceuB 1095125..1096078 (+) 954 WP_269475093.1 ABC transporter permease Machinery gene
  INP94_RS05400 (INP94_05400) - 1096071..1097030 (+) 960 WP_197541739.1 iron chelate uptake ABC transporter family permease subunit -
  INP94_RS05405 (INP94_05405) - 1097021..1097782 (+) 762 WP_197541740.1 ABC transporter ATP-binding protein -
  INP94_RS05410 (INP94_05410) - 1097797..1098705 (+) 909 WP_197541741.1 siderophore ABC transporter substrate-binding protein -
  INP94_RS05415 (INP94_05415) - 1098826..1099776 (+) 951 WP_197541742.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35030.26 Da        Isoelectric Point: 10.2040

>NTDB_id=493082 INP94_RS05395 WP_269475093.1 1095125..1096078(+) (ceuB) [Haemophilus parainfluenzae strain M1C137_2]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTAIAVIMSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493082 INP94_RS05395 WP_269475093.1 1095125..1096078(+) (ceuB) [Haemophilus parainfluenzae strain M1C137_2]
ATGATTAAGCGGCGTTATCTGATTTTTCTTTTAATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTACAAGGATTACTGAATTTTGAAGGTAATCAGTGGCAGATTTTTTTCATCAGTCGTGTGCCACGTTTAATCAGTATCT
TGATTGCGGGTGCATCCTTGAGTATTTGTGGTTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCCATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CGCCATTGCGGTCATCATGTCTTTCCTTGGCACATTATTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCCTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCCTTTATCGCTTATAAAGAAGATCTA
TTGCAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCCCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGG
GTGATCCCTTTCTTGGGGCTAATTATTCCAAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGCTAGGTGCCGTCTTTGTCTTATTCTGTGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTTGGTAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543