Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP95_RS09130 Genome accession   NZ_CP063117
Coordinates   1897649..1898365 (-) Length   238 a.a.
NCBI ID   WP_420026393.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1892649..1903365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS09110 (INP95_09105) nrdR 1892762..1893211 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP95_RS09115 (INP95_09110) recC 1893289..1896648 (-) 3360 WP_197560598.1 exodeoxyribonuclease V subunit gamma -
  INP95_RS09120 (INP95_09115) comQ 1896686..1896952 (-) 267 WP_197561046.1 DUF5374 domain-containing protein Machinery gene
  INP95_RS09125 (INP95_09120) comP 1896966..1897652 (-) 687 WP_197560599.1 DUF2572 family protein Machinery gene
  INP95_RS09130 (INP95_09125) comO 1897649..1898365 (-) 717 WP_420026393.1 hypothetical protein Machinery gene
  INP95_RS09135 (INP95_09130) comN 1898362..1898880 (-) 519 WP_197560601.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP95_RS09140 (INP95_09135) suhB 1899080..1899880 (+) 801 WP_005695663.1 inositol-1-monophosphatase -
  INP95_RS09145 (INP95_09140) bioB 1899925..1900941 (-) 1017 WP_049374926.1 biotin synthase BioB -
  INP95_RS09150 (INP95_09145) thiQ 1901015..1901644 (-) 630 WP_197546866.1 thiamine ABC transporter ATP-binding protein -
  INP95_RS09155 (INP95_09150) thiP 1901637..1903241 (-) 1605 WP_197560602.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26731.74 Da        Isoelectric Point: 7.0451

>NTDB_id=493056 INP95_RS09130 WP_420026393.1 1897649..1898365(-) (comO) [Haemophilus parainfluenzae strain M1C142_1]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQTELQRTIQLIGKDLRRVGFRAANQKLIEDNLAL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNEKMIETKQTYKNAV
NADCRSEECQRALTQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=493056 INP95_RS09130 WP_420026393.1 1897649..1898365(-) (comO) [Haemophilus parainfluenzae strain M1C142_1]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGCTATTGGTTGC
ACAATTTTATGCCCAAACTCAACAGCAGAATCAGCGTTTAATGTTACAACTCAAACTACAAACGGAATTACAACGTACAA
TTCAACTCATCGGGAAAGATCTGCGTCGTGTAGGCTTTCGAGCCGCAAACCAAAAACTCATTGAAGATAATCTGGCTTTA
TTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCAGACAATGCTCCGTCAAATAGCTGTGTTTTATTTTT
TTATGATTTAAATAGTAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGTGTAAATGGCGTTAAAAATGTGGCAA
AAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGAGAAAATGATCGAAACCAAACAAACTTATAAAAATGCGGTA
AATGCGGATTGTCGTTCAGAAGAGTGTCAGCGTGCTTTAACGCAATCTACTTGTAACGCCGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGACTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.821

98.319

0.618