Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP95_RS06120 Genome accession   NZ_CP063117
Coordinates   1239703..1242105 (+) Length   800 a.a.
NCBI ID   WP_197560335.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1234703..1247105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS06100 (INP95_06100) dcuC 1235493..1236851 (+) 1359 WP_197560333.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP95_RS06105 (INP95_06105) folK 1236906..1237409 (-) 504 WP_197560334.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP95_RS06110 (INP95_06110) pcnB 1237409..1238725 (-) 1317 WP_080971717.1 polynucleotide adenylyltransferase PcnB -
  INP95_RS06115 (INP95_06115) dksA 1239003..1239440 (-) 438 WP_049370154.1 RNA polymerase-binding protein DksA -
  INP95_RS06120 (INP95_06120) rec2 1239703..1242105 (+) 2403 WP_197560335.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP95_RS06125 (INP95_06125) msbA 1242156..1243904 (+) 1749 WP_070591245.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP95_RS06130 (INP95_06130) lpxK 1243958..1244938 (+) 981 WP_197560336.1 tetraacyldisaccharide 4'-kinase -
  INP95_RS06135 (INP95_06135) - 1244956..1245135 (+) 180 WP_197560337.1 Trm112 family protein -
  INP95_RS06140 (INP95_06140) kdsB 1245145..1245903 (+) 759 WP_197560338.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89995.64 Da        Isoelectric Point: 9.2577

>NTDB_id=493052 INP95_RS06120 WP_197560335.1 1239703..1242105(+) (rec2) [Haemophilus parainfluenzae strain M1C142_1]
MKITLFQLCMMLIVSALSLLVVPDFLLVTWQQAGLSILMLVMTALCFHWFNYFKARNFCMSTILFVITLAYAHSPALSLL
GQAERISSLPNKITLDLHISEILHQQDYQTLVAITSLFDGKAQQIFINWKALEKPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGDDFSFRTHFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQILLPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQCSRRYYAPSQMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHKKLSSKVRWIFGLFHLQLGLLVLFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTHGAFSSWHLANVIAQGITQCLSFFQGSYVPISINLSLILTALLSLVFGGVL
YGLYFASQGKTKNTLLKSSRFFTLNSTKILSPEEYKQALRSVIFIFCFCIGTLGYRYITKPKWQLDTLDVGQGLATLIVK
ERKGVLYDTGPAWQSGIGSSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYGEMHRT
FCLQGKQWQWRGLDFKVLSPTQITDRAENPQSCVILFTDGQYQILLTGDADVATERSFAENLGKINVLQVGHHGSKTSTG
EILLAQTKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFLPWFVRVIGLSTK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=493052 INP95_RS06120 WP_197560335.1 1239703..1242105(+) (rec2) [Haemophilus parainfluenzae strain M1C142_1]
ATGAAAATCACGCTATTTCAGCTGTGCATGATGCTCATTGTCTCAGCCTTATCCTTGCTTGTTGTGCCAGATTTTTTACT
GGTCACTTGGCAACAGGCAGGGTTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATGAGCACTATCTTGTTTGTGATTACTTTGGCTTATGCGCATTCACCAGCTTTATCGTTATTG
GGACAAGCAGAGAGAATTTCAAGTTTACCGAATAAAATCACTTTAGATCTTCACATTTCAGAAATTCTTCATCAGCAAGA
TTATCAAACATTGGTTGCAATAACGTCTTTATTTGATGGAAAAGCACAACAAATTTTTATTAATTGGAAAGCGCTAGAAA
AGCCACAACTAGGCGAAGTTTGGCGAGCAGATGTAAAGCTTCGTCCTATTTCGGCGAGATTAAATCATGGAGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGAGACGATTTTTC
TTTCCGCACACATTTTTTACAGAATAGCCTCAAGCAGACGGAAGGTCTTTCTTTACAAGGTTTACTTATCGCATTGGCAT
TTGGCGAGCGGGCTTGGCTGGATAATAAAACGTGGCTGATTTACCAACAAACGAATACAGCACATTTAATTGCTATTTCA
GGGTTACATATCGGTTTAGCAATGGGGATAGGCTTTTTCTTTGCTCGATTATTGCAAATACTCTTACCAACACGCTTTAT
TTCGCCATGGTTTCCGCTTTGCTTTGGCGTGTTGATTGCCTTAGGTTACGCCTATTTAGCCGGATTTAGTTTACCGACAT
TTCGTGCAATGATGGCATTGCTTTTTATTGCCATCCTTCAATGTTCTCGACGATACTACGCGCCTTCGCAAATGCTGTGT
TTGGTAGTGGCATTTTTGTTGTTTTGCGATCCGCTTATGCCACTTTCGGTGAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGTTTGATTGTATGGTACCGATATGTTCCCTTATCAATAATAGAGTGGCAACATAAAAAATTATCCAGCAAAGTGCGGT
GGATTTTTGGCTTGTTTCATTTGCAGCTTGGGCTGCTGGTTTTATTTACGCCCATTCAGCTTTTCTTTTTTAATGGTTTG
GCATTAAATGGGTTCTTAGCAAATTTAATTGCTGTGCCCTTGTATAGTTTCTTACTTGTGCCATTGATTCTCTTTGCTGT
ATTAACCCATGGTGCATTTTCTTCTTGGCATCTTGCAAATGTGATTGCTCAAGGTATTACACAATGCCTCAGTTTTTTCC
AAGGCTCGTATGTTCCGATTTCGATTAATTTATCTCTTATTCTGACCGCACTTTTAAGCCTTGTTTTTGGCGGAGTGTTA
TATGGATTGTATTTTGCATCTCAAGGGAAAACAAAAAATACACTGTTAAAATCGAGTCGATTTTTCACGTTAAACAGCAC
AAAAATCTTATCACCAGAAGAGTATAAACAAGCGCTTCGTAGTGTCATTTTTATTTTTTGTTTTTGTATTGGCACGCTTG
GGTATCGATATATCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTGGGACAAGGTTTAGCAACATTAATTGTGAAA
GAGAGGAAAGGTGTGTTGTATGACACTGGCCCCGCTTGGCAGAGTGGAATAGGTAGCTCTTCTATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGAGAAGGTATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAACGATCATTCAGGCGGCG
CTAAAGCGATTTTAGCCGCCTATCCAGAGATTGAACTGATTACACCTTCTCGTAAAAACTATGGCGAAATGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGGCTTGATTTTAAAGTTCTTTCACCAACGCAAATAACAGATAGGGC
GGAGAATCCCCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAGATTCTGTTAACCGGTGATGCGGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAACCTCGGCAAAATTAACGTGTTACAGGTAGGACATCATGGTAGTAAAACTTCAACTGGA
GAAATTTTACTAGCACAGACAAAACCGGATATAGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACGGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAGGCGAGAGGAGATTTTTTACCTTGGTTTGTCCGTGTAATTGGATTATCCACAAAA
TAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-736)

Domain of unknown function (DUF4131) (DUF4131)

(33-179)

Competence protein (Competence)

(212-477)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.674

100

0.607