Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP95_RS04880 Genome accession   NZ_CP063117
Coordinates   1005990..1006943 (+) Length   317 a.a.
NCBI ID   WP_070591532.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C142_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1000990..1011943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP95_RS04860 (INP95_04860) accA 1001577..1002524 (-) 948 WP_049368033.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP95_RS04865 (INP95_04865) znuB 1002612..1003397 (-) 786 WP_054418308.1 zinc ABC transporter permease subunit ZnuB -
  INP95_RS04870 (INP95_04870) znuC 1003407..1004201 (-) 795 WP_070591540.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP95_RS04875 (INP95_04875) mepM 1004381..1005856 (+) 1476 WP_070591538.1 murein DD-endopeptidase MepM -
  INP95_RS04880 (INP95_04880) ceuB 1005990..1006943 (+) 954 WP_070591532.1 ABC transporter permease Machinery gene
  INP95_RS04885 (INP95_04885) - 1006936..1007895 (+) 960 WP_070591528.1 iron chelate uptake ABC transporter family permease subunit -
  INP95_RS04890 (INP95_04890) - 1007886..1008647 (+) 762 WP_070591526.1 ABC transporter ATP-binding protein -
  INP95_RS04895 (INP95_04895) - 1008662..1009570 (+) 909 WP_070583059.1 siderophore ABC transporter substrate-binding protein -
  INP95_RS04900 (INP95_04900) - 1009691..1010641 (+) 951 WP_070591524.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34950.16 Da        Isoelectric Point: 10.2040

>NTDB_id=493049 INP95_RS04880 WP_070591532.1 1005990..1006943(+) (ceuB) [Haemophilus parainfluenzae strain M1C142_1]
MVKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTAIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493049 INP95_RS04880 WP_070591532.1 1005990..1006943(+) (ceuB) [Haemophilus parainfluenzae strain M1C142_1]
ATGGTTAAGAGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATTTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCAGGTGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCTACCACG
GCGGGCACAATGGACAGCGCACGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACGGCCTCAATGTTGTTAAAAAC
CGCAATTGCAGTGATCGTCTCTTTCCTTGGTACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACCA
TTTTTGTACCTTTAGTAGGGATTATGTTTGGTAATATTATTAGCTCGATTACCGCCTTTATTGCTTACAAAGAAGACTTG
TTACAAAACTTATCGGGATGGTTACAAGGGGATTTTTCGCTTGTGATGTCTGGTCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGACTTTGCGGTTAATCTGG
GTCTAAATTACAACCAAGTACTTTATCTCGGATTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGCTAATTATTCCAAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGTTAGGTGCGGTATTTGTTTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543