Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   INP96_RS08890 Genome accession   NZ_CP063116
Coordinates   1832048..1832566 (-) Length   172 a.a.
NCBI ID   WP_049355385.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1827048..1837566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS08875 (INP96_08870) comQ 1830372..1830638 (-) 267 WP_197556367.1 DUF5374 domain-containing protein Machinery gene
  INP96_RS08880 (INP96_08875) comP 1830652..1831338 (-) 687 WP_197555830.1 DUF2572 family protein Machinery gene
  INP96_RS08885 (INP96_08880) comO 1831335..1832051 (-) 717 WP_197556368.1 PulJ/GspJ family protein Machinery gene
  INP96_RS08890 (INP96_08885) comN 1832048..1832566 (-) 519 WP_049355385.1 hypothetical protein Machinery gene
  INP96_RS08895 (INP96_08890) suhB 1832767..1833567 (+) 801 WP_197555831.1 inositol-1-monophosphatase -
  INP96_RS08900 (INP96_08895) bioB 1833613..1834629 (-) 1017 WP_049366106.1 biotin synthase BioB -
  INP96_RS08905 (INP96_08900) thiQ 1834703..1835332 (-) 630 WP_070582154.1 thiamine ABC transporter ATP-binding protein -
  INP96_RS08910 (INP96_08905) thiP 1835325..1836929 (-) 1605 WP_070582153.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20119.27 Da        Isoelectric Point: 8.9317

>NTDB_id=493025 INP96_RS08890 WP_049355385.1 1832048..1832566(-) (comN) [Haemophilus parainfluenzae strain M1C146_1]
MYKGITLLETLIVLFILSLTLAFALPKWQKNDPKYFLEKEQQRLYFFLRNIQARAENSSAIWFILANQDRANQRWCITAQ
VKSDHFCDCFHPQNCPKNLYAHFYYPYFEGKTMLIGPKLYPSEVAVKFNGARNTMETNCFMLQAEEHRTLFSFFNVGSIK
LKSDQAASACTR

Nucleotide


Download         Length: 519 bp        

>NTDB_id=493025 INP96_RS08890 WP_049355385.1 1832048..1832566(-) (comN) [Haemophilus parainfluenzae strain M1C146_1]
ATGTATAAAGGGATAACCTTATTAGAAACCTTGATTGTATTATTTATTTTAAGCTTAACGTTGGCGTTTGCATTGCCTAA
ATGGCAGAAAAATGATCCCAAATATTTTCTCGAAAAAGAGCAACAACGGCTTTATTTTTTCCTGCGAAATATTCAAGCAA
GAGCAGAAAATTCATCAGCGATTTGGTTTATTTTAGCCAATCAAGATAGGGCAAATCAACGTTGGTGTATCACAGCTCAA
GTAAAAAGTGATCATTTTTGTGATTGTTTTCATCCCCAGAATTGTCCTAAAAACCTTTATGCGCATTTTTATTATCCTTA
TTTTGAAGGAAAAACGATGCTGATAGGCCCTAAATTATATCCATCAGAAGTGGCAGTGAAATTTAATGGGGCCAGAAATA
CCATGGAAACGAATTGTTTTATGTTACAGGCTGAAGAGCATCGAACATTGTTCTCTTTTTTCAATGTGGGCAGTATTAAA
TTAAAGTCTGATCAAGCAGCGAGTGCATGTACAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.412

98.837

0.587