Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   INP96_RS08880 Genome accession   NZ_CP063116
Coordinates   1830652..1831338 (-) Length   228 a.a.
NCBI ID   WP_197555830.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1825652..1836338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS08865 (INP96_08860) nrdR 1826448..1826897 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP96_RS08870 (INP96_08865) recC 1826975..1830334 (-) 3360 WP_197555829.1 exodeoxyribonuclease V subunit gamma -
  INP96_RS08875 (INP96_08870) comQ 1830372..1830638 (-) 267 WP_197556367.1 DUF5374 domain-containing protein Machinery gene
  INP96_RS08880 (INP96_08875) comP 1830652..1831338 (-) 687 WP_197555830.1 DUF2572 family protein Machinery gene
  INP96_RS08885 (INP96_08880) comO 1831335..1832051 (-) 717 WP_197556368.1 PulJ/GspJ family protein Machinery gene
  INP96_RS08890 (INP96_08885) comN 1832048..1832566 (-) 519 WP_049355385.1 hypothetical protein Machinery gene
  INP96_RS08895 (INP96_08890) suhB 1832767..1833567 (+) 801 WP_197555831.1 inositol-1-monophosphatase -
  INP96_RS08900 (INP96_08895) bioB 1833613..1834629 (-) 1017 WP_049366106.1 biotin synthase BioB -
  INP96_RS08905 (INP96_08900) thiQ 1834703..1835332 (-) 630 WP_070582154.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25543.53 Da        Isoelectric Point: 9.5399

>NTDB_id=493023 INP96_RS08880 WP_197555830.1 1830652..1831338(-) (comP) [Haemophilus parainfluenzae strain M1C146_1]
MMMKKGIVTLTALILLSGLLALILLFDEQIFAFFRAQMSQRKYHVEHNLPLQKISQQQQTHICQNLPLNGTEKVKQVFFE
SSGAEDKVAYSVWCKRAELFKKSPTKGINETMLRDFISSEKQADFQPHFVKVDTTLTAQKTPQVYWITKSQLEIKGNVSG
ILLAEGNLTLTGKGRISGAVITGGSLKLEGDVTVAYGKAVVTKLVQEYSQWRLVDKSWSDLSAQDQSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=493023 INP96_RS08880 WP_197555830.1 1830652..1831338(-) (comP) [Haemophilus parainfluenzae strain M1C146_1]
ATGATGATGAAAAAAGGGATTGTGACACTGACGGCGCTAATTTTACTTTCGGGCTTATTGGCATTGATCTTATTATTTGA
TGAACAGATCTTTGCATTTTTTCGAGCTCAAATGAGTCAGCGAAAATATCATGTAGAACATAACCTTCCTTTACAGAAAA
TCAGTCAGCAACAACAAACACACATTTGCCAAAACTTGCCTTTAAATGGTACTGAAAAAGTGAAACAAGTTTTTTTTGAG
TCTTCAGGGGCTGAGGATAAAGTCGCCTATTCTGTTTGGTGTAAACGTGCAGAGTTATTTAAGAAATCGCCCACAAAAGG
CATTAATGAAACTATGCTGCGAGATTTTATTTCCAGCGAAAAACAAGCTGATTTTCAACCGCACTTTGTGAAAGTCGATA
CGACTTTAACTGCTCAAAAAACACCACAAGTGTATTGGATAACGAAAAGCCAATTAGAAATTAAAGGGAATGTGAGTGGT
ATTTTGCTAGCAGAAGGAAATTTAACCTTAACCGGCAAAGGACGAATAAGCGGTGCAGTGATTACAGGTGGTTCACTTAA
GTTAGAGGGAGATGTGACGGTGGCTTACGGTAAAGCCGTGGTGACAAAACTCGTACAAGAATATAGCCAATGGCGTTTGG
TGGATAAAAGTTGGAGTGATTTAAGTGCGCAAGATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

53.07

100

0.531