Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP96_RS05785 Genome accession   NZ_CP063116
Coordinates   1164358..1166760 (+) Length   800 a.a.
NCBI ID   WP_197555469.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1159358..1171760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS05765 (INP96_05765) dcuC 1160148..1161506 (+) 1359 WP_111386948.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP96_RS05770 (INP96_05770) folK 1161561..1162064 (-) 504 WP_111386950.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP96_RS05775 (INP96_05775) pcnB 1162064..1163422 (-) 1359 WP_207930104.1 polynucleotide adenylyltransferase PcnB -
  INP96_RS05780 (INP96_05780) dksA 1163658..1164095 (-) 438 WP_049384440.1 RNA polymerase-binding protein DksA -
  INP96_RS05785 (INP96_05785) rec2 1164358..1166760 (+) 2403 WP_197555469.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP96_RS05790 (INP96_05790) msbA 1166798..1168561 (+) 1764 WP_197555470.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP96_RS05795 (INP96_05795) lpxK 1168615..1169595 (+) 981 WP_197555471.1 tetraacyldisaccharide 4'-kinase -
  INP96_RS05800 (INP96_05800) - 1169613..1169792 (+) 180 WP_197555472.1 Trm112 family protein -
  INP96_RS05805 (INP96_05805) kdsB 1169802..1170560 (+) 759 WP_197555473.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89962.38 Da        Isoelectric Point: 8.8619

>NTDB_id=493020 INP96_RS05785 WP_197555469.1 1164358..1166760(+) (rec2) [Haemophilus parainfluenzae strain M1C146_1]
MKITLFQLCMMLIVSALSLLVVPDFLLFTWQQAGLSILMLVMTALCFHWFNYFKVRNFCISSISFLLTLAYAHSPALSLL
GQAEKISSLPNKITLDLQISEILHQQDYQTLVATTSLFDGQEQRIFINWKAPEKPQVGEIWQAEVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGEDFSYRTDFLQNSLKLTEGFSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARFLQFVLPTSFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQCYRRYYTPSQMLC
LVVAFLLFCDPLMPLSVSFWLSIGAVACLIVWYRYVPLSIIEWPHQKLSSKVRWILGLFHLQLGLLILFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTHGAFFSWHLANVIAQGITQCLRVFHGSYMPISINLSLILTALLSLVFGGVL
GGLYFASQGKTKNTPLKSSRFFTLNHTKILSAKDYKQALLGVILIFSMCMSTLGYRYFTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKVILAAYPEVELITPSRKNYGETHRT
FCLQGKQWQWRGLDFKILSPTQITDRAENPQSCVILFTDGQYQILLTGDADVATERSFAENLDKINVLQVGHHGSKTSTG
EILLAQTKPDLALISSGRWNPWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKSIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=493020 INP96_RS05785 WP_197555469.1 1164358..1166760(+) (rec2) [Haemophilus parainfluenzae strain M1C146_1]
ATGAAAATCACGCTATTTCAATTGTGCATGATGCTCATTGTTTCAGCCTTATCCTTGCTTGTCGTGCCCGATTTTTTACT
GTTCACTTGGCAACAGGCTGGGCTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGTCAGAAATTTTTGCATAAGCAGTATTTCGTTTTTGCTTACGTTGGCTTATGCACATTCACCAGCCTTATCGTTATTG
GGACAAGCAGAGAAAATTTCAAGTTTACCGAATAAAATCACATTAGATCTCCAGATTTCAGAAATTCTTCATCAACAAGA
TTATCAAACGTTGGTTGCGACAACGTCTTTATTTGATGGGCAGGAACAACGGATTTTTATTAATTGGAAAGCGCCGGAAA
AGCCACAAGTAGGTGAAATTTGGCAGGCAGAAGTAAAACTTCGACCTATTTCTGCAAGACTTAATCACGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGGGAAGATTTTTC
TTACCGCACCGATTTTCTACAGAATAGCCTTAAGCTGACGGAAGGGTTTTCTTTACAAGGTTTACTTATCGCATTGGCAT
TTGGTGAGCGGGCTTGGCTGGATAATAAAACGTGGCTGATTTATCAACAAACGAATACAGCACATTTGATTGCTATTTCA
GGATTACATATCGGTTTAGCAATGGGGATAGGCTTTTTCTTTGCTCGATTCTTGCAATTCGTACTGCCTACAAGCTTTAT
CTCACCCTGGTTTCCACTTTGCTTTGGTGTGTTGATTGCCTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACTT
TCCGTGCAATGATGGCGTTGCTTTTTATTGCAATCCTTCAATGTTATCGACGATATTACACGCCTTCTCAAATGCTTTGT
TTAGTGGTGGCATTTTTGCTTTTTTGTGATCCACTTATGCCGCTTTCGGTGAGCTTTTGGCTTTCAATTGGTGCAGTTGC
CTGTCTAATTGTGTGGTATCGATATGTTCCCTTATCAATCATTGAATGGCCGCATCAAAAATTATCCAGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAGTTAGGGCTGTTGATTTTATTCACGCCTATTCAGCTTTTCTTTTTTAATGGCTTG
GCATTAAATGGGTTCTTAGCAAATTTAATTGCAGTACCCTTGTATAGTTTCTTACTTGTGCCATTGATTCTCTTTGCGGT
GTTGACCCATGGTGCATTTTTTTCTTGGCATCTTGCAAATGTGATTGCTCAAGGTATTACACAATGCCTCCGTGTTTTCC
ACGGCTCGTATATGCCGATTTCGATTAATTTATCTCTTATTCTGACCGCACTTTTAAGCCTTGTTTTTGGTGGAGTGTTA
GGTGGATTGTATTTTGCATCTCAAGGGAAAACAAAAAATACACCGTTAAAATCGAGTCGATTTTTCACGTTAAATCATAC
AAAAATCTTATCAGCAAAAGATTATAAACAAGCTCTATTGGGCGTAATTCTTATTTTTAGTATGTGTATGAGTACGCTAG
GATATCGATATTTCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTGGGACAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGGAAAGGTGTGTTGTATGACACGGGGCCTGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGCGGAATTAGAGAT
ATTACCTTATCTTCAACGAGAAGGTATTGAACTTGAAACCTTGATTTTAAGCCACGATGATAATGATCATTCGGGCGGCG
CTAAAGTGATTTTAGCCGCCTATCCAGAAGTTGAACTAATCACACCTTCTCGTAAAAACTATGGCGAAACTCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCAGTGGCGAGGACTTGATTTTAAAATTCTTTCACCAACGCAAATAACAGATAGGGC
GGAGAATCCTCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAAATTCTTTTAACCGGTGATGCGGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAACCTAGACAAAATTAATGTGTTGCAGGTGGGGCATCATGGTAGTAAAACGTCAACAGGC
GAGATTTTACTGGCACAGACAAAACCTGATCTTGCCTTAATTTCAAGCGGACGATGGAATCCGTGGAATTTCCCTCATCC
AACAGTCATTGAACGATTAAATCGTTATCAAAGCGCAGTCGAAAATACGGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAAAGCATTGAAATTGAAAAGGCAAGAGGGGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-476)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)

Domain of unknown function (DUF4131) (DUF4131)

(33-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

61.049

100

0.611