Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP96_RS04845 Genome accession   NZ_CP063116
Coordinates   983833..984786 (+) Length   317 a.a.
NCBI ID   WP_005697091.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C146_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 978833..989786
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP96_RS04825 (INP96_04825) accA 979421..980368 (-) 948 WP_197555374.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP96_RS04830 (INP96_04830) znuB 980456..981241 (-) 786 WP_111314785.1 zinc ABC transporter permease subunit ZnuB -
  INP96_RS04835 (INP96_04835) znuC 981251..982045 (-) 795 WP_197555375.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP96_RS04840 (INP96_04840) mepM 982224..983699 (+) 1476 WP_197555376.1 murein DD-endopeptidase MepM -
  INP96_RS04845 (INP96_04845) ceuB 983833..984786 (+) 954 WP_005697091.1 ABC transporter permease Machinery gene
  INP96_RS04850 (INP96_04850) - 984779..985738 (+) 960 WP_197555377.1 iron chelate uptake ABC transporter family permease subunit -
  INP96_RS04855 (INP96_04855) - 985729..986490 (+) 762 WP_178162691.1 ABC transporter ATP-binding protein -
  INP96_RS04860 (INP96_04860) - 986505..987413 (+) 909 WP_197555378.1 siderophore ABC transporter substrate-binding protein -
  INP96_RS04865 (INP96_04865) - 987534..988484 (+) 951 WP_197555379.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35028.23 Da        Isoelectric Point: 10.2040

>NTDB_id=493018 INP96_RS04845 WP_005697091.1 983833..984786(+) (ceuB) [Haemophilus parainfluenzae strain M1C146_1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=493018 INP96_RS04845 WP_005697091.1 983833..984786(+) (ceuB) [Haemophilus parainfluenzae strain M1C146_1]
ATGATTAAGAGACGTTATCTGATTTTTCTGTTGATCGTACTGTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACTGTTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATATTTTTCATCAGTAGAGTGCCTCGTTTAATCAGTATCT
TGATTGCGGGTGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCAATGCTGTTTTTCCCAACGGCGTCTATGTTGTTAAAAAC
CACCATTGCGGTGATTGTGTCTTTTCTTGGTACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTACCTTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCGATTACCGCCTTTATTGCTTACAAAGAAGATTTA
TTGCAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCCCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTGGGC
GTGATCCCTTTCTTGGGGCTAATTATCCCGAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGCTAGGTGCCGTCTTTGTCTTATTCTGTGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGCGTATTTGGCAGTGGGATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543