Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   INP97_RS08940 Genome accession   NZ_CP063113
Coordinates   1848452..1848970 (-) Length   172 a.a.
NCBI ID   WP_111315482.1    Uniprot ID   A0A369Z4L8
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1843452..1853970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS08925 (INP97_08905) comQ 1846776..1847042 (-) 267 WP_197563574.1 DUF5374 domain-containing protein Machinery gene
  INP97_RS08930 (INP97_08910) comP 1847056..1847742 (-) 687 WP_197562616.1 DUF2572 family protein Machinery gene
  INP97_RS08935 (INP97_08915) comO 1847739..1848455 (-) 717 WP_197562617.1 PulJ/GspJ family protein Machinery gene
  INP97_RS08940 (INP97_08920) comN 1848452..1848970 (-) 519 WP_111315482.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP97_RS08945 (INP97_08925) suhB 1849171..1849971 (+) 801 WP_197562618.1 inositol-1-monophosphatase -
  INP97_RS08950 (INP97_08930) bioB 1850016..1851032 (-) 1017 WP_197562619.1 biotin synthase BioB -
  INP97_RS08955 (INP97_08935) thiQ 1851106..1851735 (-) 630 WP_197543570.1 thiamine ABC transporter ATP-binding protein -
  INP97_RS08960 (INP97_08940) thiP 1851728..1853332 (-) 1605 WP_197562620.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 20095.29 Da        Isoelectric Point: 8.9309

>NTDB_id=492994 INP97_RS08940 WP_111315482.1 1848452..1848970(-) (comN) [Haemophilus parainfluenzae strain M1C147_1]
MYKGITLLETLIVLFILSLTLAFALPKWQKNDPKYFLEKEQQRLYFFLRNIQARAENSSAIWFILANQDRANQRWCITAQ
VKSDLFCDCFHPQNCPKNLYAHFYYPYFEGKTMLLGPKLYPSEVAVKFNGARNTMETNCFMLQAEEHRTLFSFFNVGSIK
LKSDQAASACTR

Nucleotide


Download         Length: 519 bp        

>NTDB_id=492994 INP97_RS08940 WP_111315482.1 1848452..1848970(-) (comN) [Haemophilus parainfluenzae strain M1C147_1]
ATGTATAAAGGGATAACCTTATTAGAAACCTTGATTGTATTATTTATTTTAAGCTTAACATTAGCGTTTGCATTGCCTAA
ATGGCAGAAAAATGATCCCAAATATTTTCTCGAAAAAGAGCAACAACGGCTTTATTTTTTCTTACGTAATATTCAAGCGA
GGGCGGAAAACTCATCGGCGATTTGGTTTATTTTGGCCAATCAAGATAGGGCAAATCAACGTTGGTGTATCACAGCTCAA
GTAAAAAGCGATCTTTTTTGTGATTGTTTTCATCCCCAGAATTGTCCTAAAAACCTTTATGCGCATTTTTACTATCCTTA
TTTTGAAGGAAAAACGATGCTGCTAGGCCCTAAATTATATCCGTCAGAAGTGGCAGTGAAATTTAATGGAGCCAGAAATA
CCATGGAAACAAATTGTTTTATGTTACAGGCTGAAGAACATCGTACATTGTTCTCTTTTTTCAATGTGGGCAGTATTAAA
TTAAAGTCTGATCAAGCGGCGAGTGCGTGTACAAGATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A369Z4L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.412

98.837

0.587