Detailed information    

insolico Bioinformatically predicted

Overview

Name   comP   Type   Machinery gene
Locus tag   INP97_RS08930 Genome accession   NZ_CP063113
Coordinates   1847056..1847742 (-) Length   228 a.a.
NCBI ID   WP_197562616.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1842056..1852742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS08915 (INP97_08895) nrdR 1842852..1843301 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP97_RS08920 (INP97_08900) recC 1843379..1846738 (-) 3360 WP_197562615.1 exodeoxyribonuclease V subunit gamma -
  INP97_RS08925 (INP97_08905) comQ 1846776..1847042 (-) 267 WP_197563574.1 DUF5374 domain-containing protein Machinery gene
  INP97_RS08930 (INP97_08910) comP 1847056..1847742 (-) 687 WP_197562616.1 DUF2572 family protein Machinery gene
  INP97_RS08935 (INP97_08915) comO 1847739..1848455 (-) 717 WP_197562617.1 PulJ/GspJ family protein Machinery gene
  INP97_RS08940 (INP97_08920) comN 1848452..1848970 (-) 519 WP_111315482.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP97_RS08945 (INP97_08925) suhB 1849171..1849971 (+) 801 WP_197562618.1 inositol-1-monophosphatase -
  INP97_RS08950 (INP97_08930) bioB 1850016..1851032 (-) 1017 WP_197562619.1 biotin synthase BioB -
  INP97_RS08955 (INP97_08935) thiQ 1851106..1851735 (-) 630 WP_197543570.1 thiamine ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25448.42 Da        Isoelectric Point: 9.2585

>NTDB_id=492992 INP97_RS08930 WP_197562616.1 1847056..1847742(-) (comP) [Haemophilus parainfluenzae strain M1C147_1]
MIMKKGMVTLTALILLSGLLALILLFDEQIFAFFRSQMSQRKYYVEQSLALQKISLQQQTHICQNLPLNGTEKVKQVFFE
SSGAEDKVAYSVWCKRAELFKKSPTKGINENMLRDFISSEKQADFQPHFVKVESVLTAQKTPQVYWITQSQLEIKGNVSG
ILLAEGDLSLTGKGRISGAVITGGSLKLAGDVTVAYGKAVVTKLVQEYSQWRLVDKSWSDLSAQDQSE

Nucleotide


Download         Length: 687 bp        

>NTDB_id=492992 INP97_RS08930 WP_197562616.1 1847056..1847742(-) (comP) [Haemophilus parainfluenzae strain M1C147_1]
ATGATCATGAAAAAAGGGATGGTGACACTGACGGCGCTAATTTTACTTTCGGGATTATTGGCCTTGATCTTATTATTTGA
TGAACAGATCTTTGCATTTTTTCGATCTCAAATGAGTCAGCGAAAATATTATGTAGAACAAAGCCTAGCGTTACAGAAAA
TCAGTCTGCAACAACAAACACACATTTGTCAAAACTTGCCTTTAAATGGTACTGAAAAAGTGAAACAAGTCTTTTTCGAG
TCTTCAGGGGCAGAGGATAAAGTCGCCTATTCTGTTTGGTGTAAACGTGCAGAGTTATTTAAGAAATCGCCCACAAAAGG
CATTAATGAAAATATGCTGCGAGATTTTATTTCCAGCGAAAAACAAGCTGATTTTCAACCGCACTTTGTGAAAGTAGAGT
CAGTTTTAACTGCTCAAAAAACACCCCAAGTGTATTGGATAACGCAAAGCCAATTAGAAATTAAAGGGAATGTGAGTGGT
ATTCTGCTAGCAGAAGGTGATTTAAGTTTAACCGGCAAAGGGCGTATTAGTGGTGCTGTGATTACTGGAGGCTCACTTAA
GTTGGCGGGAGACGTGACGGTAGCTTACGGTAAAGCCGTGGTAACAAAACTTGTACAAGAATATAGCCAATGGCGTTTGG
TGGATAAAAGTTGGAGTGATTTAAGTGCGCAAGATCAAAGTGAATAA

Domains

Predicted by InterproScan.

Protein of unknown function (DUF2572) (DUF2572)

(5-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Haemophilus influenzae Rd KW20

53.07

100

0.531