Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP97_RS05955 Genome accession   NZ_CP063113
Coordinates   1196970..1199372 (+) Length   800 a.a.
NCBI ID   WP_197562313.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191970..1204372
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS05935 (INP97_05930) dcuC 1192760..1194118 (+) 1359 WP_197562311.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP97_RS05940 (INP97_05935) folK 1194173..1194676 (-) 504 WP_197562312.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP97_RS05945 (INP97_05940) pcnB 1194676..1196172 (-) 1497 WP_420026403.1 polynucleotide adenylyltransferase PcnB -
  INP97_RS05950 (INP97_05945) dksA 1196270..1196707 (-) 438 WP_049384440.1 RNA polymerase-binding protein DksA -
  INP97_RS05955 (INP97_05950) rec2 1196970..1199372 (+) 2403 WP_197562313.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP97_RS05960 (INP97_05955) msbA 1199410..1201173 (+) 1764 WP_197562314.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP97_RS05965 (INP97_05960) lpxK 1201227..1202207 (+) 981 WP_197562315.1 tetraacyldisaccharide 4'-kinase -
  INP97_RS05970 (INP97_05965) - 1202225..1202404 (+) 180 WP_005696424.1 Trm112 family protein -
  INP97_RS05975 (INP97_05970) kdsB 1202414..1203172 (+) 759 WP_197562316.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90007.43 Da        Isoelectric Point: 9.0382

>NTDB_id=492989 INP97_RS05955 WP_197562313.1 1196970..1199372(+) (rec2) [Haemophilus parainfluenzae strain M1C147_1]
MKITLFQLCMMLIVSALSLLVVPDFLLFTWQQAGLSILMLVMTALCFHWFNYFKARNFCISSILFLLTLAYAHLPALSLL
GQAERISSLPNKIALDLHISEILHQQDYQTLVATTSLFDGQEQRIFINWKAPENPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIITVGNVKSAVKIGEDFSYRIHFLQNSLKQTEGFSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLALPTRFISPWFPLCFGVVIALGYAYLAGFSLPTFRAMMALLFITIFQFSRRYYTSLQMLC
LVVAFLLFCDPLMPLSMSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSGKVRWILGLFHLQFGLLILFTPIQLFFFNSS
ALNGFLANLIAVPLYSFLLVPLILFAVLSNGAFSSWHLSNAIAQGITQCLSFFQGSYMPISMNLSLVLTALLSLVFGGVL
YGLYFVSQAQTKNKPLKSSRFFTLNSTKILLPEDYKQALLGVILIFSVCMSTLGYRYLTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGSSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYGETHRT
FCLQGKQWQWRGLDFKVLSPVQIIDRAENPQSCVILLTDGQYQILLTGDADVATERSFAEKLGKINVLQVGHHGSKTSTG
EILLGQTKPDLALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=492989 INP97_RS05955 WP_197562313.1 1196970..1199372(+) (rec2) [Haemophilus parainfluenzae strain M1C147_1]
ATGAAAATCACGCTATTTCAACTGTGCATGATGCTCATTGTTTCAGCCTTATCCTTGCTTGTCGTGCCAGATTTTTTACT
GTTTACTTGGCAACAGGCTGGGCTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATAAGCAGTATTTTGTTTTTGCTTACGTTGGCTTATGCCCATTTACCAGCCTTATCATTATTG
GGACAAGCAGAGAGGATTTCAAGTTTACCGAATAAAATCGCCTTAGATCTTCACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACGTTGGTTGCGACGACGTCCTTATTTGATGGGCAAGAACAACGGATTTTTATTAATTGGAAAGCACCGGAAA
ACCCACAATTAGGCGAGGTTTGGCGGGCTGATGTAAAGCTTCGCCCTATTTCTGCGAGATTAAATCATGGGGGATTTGAT
CGACAACAATGGTATTTTTCAAAAAGGATTATTACCGTTGGAAATGTGAAAAGTGCGGTCAAAATTGGTGAAGATTTTTC
TTACCGCATACATTTTCTACAGAATAGCCTCAAGCAAACAGAGGGGTTTTCTTTGCAAGGCTTGCTTATCGCATTAGCAT
TTGGCGAGCGGGCTTGGTTAGATAATAAAACGTGGCTGATTTATCAACAAACGAATACGGCACATTTGATTGCGATTTCA
GGACTCCATATCGGTTTAGCCATGGGAATAGGCTTTTTCTTTGCGCGATTATTGCAACTTGCATTACCTACACGTTTTAT
TTCACCCTGGTTTCCGCTTTGCTTTGGCGTGGTGATTGCCTTAGGTTACGCTTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCGTTGCTTTTTATTACAATCTTTCAATTTTCGCGACGATATTACACATCGTTGCAAATGCTTTGT
TTAGTAGTGGCATTTTTGCTTTTTTGTGATCCACTTATGCCACTTTCGATGAGCTTTTGGCTTTCAGTTGGTGCCGTAAC
CTGTTTGATTGTGTGGTACCGATATGTTCCCTTATCAATCATTGAATGGCAGCATCAAAAATTATCTGGCAAAGTGCGGT
GGATTTTGGGCTTGTTTCATTTGCAGTTTGGGTTGTTGATTTTATTCACGCCCATTCAGCTTTTCTTTTTTAATAGCTCG
GCGTTAAATGGATTCTTGGCAAATTTAATTGCAGTACCCTTGTATAGCTTCTTACTTGTACCTTTGATTCTCTTTGCTGT
GTTGAGCAATGGTGCATTTTCTTCTTGGCATCTTTCAAATGCGATTGCTCAAGGTATTACACAATGCCTCAGTTTTTTCC
AGGGCTCGTATATGCCAATTTCGATGAATTTATCCCTCGTTTTGACCGCACTTTTAAGCCTTGTTTTTGGCGGAGTGTTA
TATGGATTGTATTTTGTATCTCAAGCTCAAACAAAAAATAAACCGTTAAAATCAAGTCGATTTTTCACGTTAAATAGTAC
AAAAATCTTACTGCCAGAAGATTATAAACAAGCTCTATTGGGCGTAATTCTTATTTTTAGCGTTTGTATGAGTACGCTTG
GGTATCGATATCTCACGAAACCAAAATGGCAGTTAGATACCTTAGATGTGGGACAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGGAAAGGCGTTTTGTATGACACCGGGCCAGCTTGGCAGAGTGGAATAGGTAGCTCTTCTATGGCGGAATTGGAAAT
ATTGCCTTACCTTCAACGAGAAGGCATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAACGACCATTCAGGCGGCG
CTAAAGCGATTTTAGCCGCATATCCAGAGATTGAACTGATAACACCTTCTCGTAAAAACTATGGCGAAACGCACCGCACT
TTTTGTCTTCAGGGGAAGCAATGGCAGTGGCGAGGACTTGATTTTAAAGTTCTTTCACCTGTGCAAATTATAGATAGGGC
GGAGAATCCGCAATCTTGCGTAATTTTACTAACGGATGGACAGTATCAGATCCTTTTAACTGGTGATGCTGATGTGGCGA
CAGAAAGATCTTTTGCTGAAAAACTAGGCAAAATTAATGTGTTACAGGTAGGACATCATGGCAGTAAAACCTCAACAGGT
GAGATTTTACTGGGACAGACGAAACCTGATCTTGCCTTAATTTCAAGCGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGCTAAATCGTTATCAAAGTGCGGTCGAAAATACGGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAAGGGATTGAAATTGAAAAGGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-477)

Domain of unknown function (DUF4131) (DUF4131)

(33-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-734)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.3

100

0.604