Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP97_RS04760 Genome accession   NZ_CP063113
Coordinates   964871..965824 (+) Length   317 a.a.
NCBI ID   WP_269475133.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 959871..970824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS04740 (INP97_04735) accA 960458..961405 (-) 948 WP_197563495.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP97_RS04745 (INP97_04740) znuB 961494..962279 (-) 786 WP_197563497.1 zinc ABC transporter permease subunit ZnuB -
  INP97_RS04750 (INP97_04745) znuC 962289..963083 (-) 795 WP_197563499.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP97_RS04755 (INP97_04750) mepM 963262..964737 (+) 1476 WP_197563501.1 murein DD-endopeptidase MepM -
  INP97_RS04760 (INP97_04755) ceuB 964871..965824 (+) 954 WP_269475133.1 ABC transporter permease Machinery gene
  INP97_RS04765 (INP97_04760) - 965817..966776 (+) 960 WP_049366403.1 iron chelate uptake ABC transporter family permease subunit -
  INP97_RS04770 (INP97_04765) - 966767..967528 (+) 762 WP_014064887.1 ABC transporter ATP-binding protein -
  INP97_RS04775 (INP97_04770) - 967543..968451 (+) 909 WP_197563503.1 siderophore ABC transporter substrate-binding protein -
  INP97_RS04780 (INP97_04775) - 968572..969522 (+) 951 WP_197563505.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35008.24 Da        Isoelectric Point: 10.2040

>NTDB_id=492986 INP97_RS04760 WP_269475133.1 964871..965824(+) (ceuB) [Haemophilus parainfluenzae strain M1C147_1]
MIKRRYLIFLLIVLSLVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFLPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492986 INP97_RS04760 WP_269475133.1 964871..965824(+) (ceuB) [Haemophilus parainfluenzae strain M1C147_1]
ATGATTAAGCGACGTTATCTGATTTTTCTTTTGATCGTGCTTTCCCTTGTTTCACTTTTTCTCGGGGTAAGTACTGTTAA
TCTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTTATCAGTCGAGTGCCTCGTTTAATCAGTATAT
TGATTGCGGGTGCATCCTTAAGTATTTGTGGCTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACT
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACGGCTTCAATGTTGTTAAAAAC
GACCATTGCTGTCATCGTGTCTTTCCTTGGCACATTGTTATTTATGACGATTTTATCCCGTTTGAAATTCAAGGACACGA
TTTTTCTGCCATTAGTAGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCCTTTATTGCCTACAAAGAAGATTTA
TTACAAAACTTATCTGGATGGCTACAAGGGGATTTCTCGCTTGTGATGTCTGGTCGTTATGAATTGTTATATTTCAGTAT
TCCTACACTCATTGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCCGTCAATTTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGATTGCTCATTGTGGCGGTTGTGTCCTCTATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGTTAATTATTCCGAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGTTAGGTGCGGTATTTGTCTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGCGTATTTGGCAGTGGTATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.34

97.476

0.539