Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INP97_RS03100 Genome accession   NZ_CP063113
Coordinates   626017..626685 (+) Length   222 a.a.
NCBI ID   WP_197563161.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C147_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 621017..631685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP97_RS03075 (INP97_03070) - 622045..622863 (+) 819 WP_197563154.1 Cof-type HAD-IIB family hydrolase -
  INP97_RS03080 (INP97_03075) crcB 622864..623259 (+) 396 WP_197563155.1 fluoride efflux transporter CrcB -
  INP97_RS03085 (INP97_03080) recX 623234..623686 (-) 453 WP_197563157.1 recombination regulator RecX -
  INP97_RS03090 (INP97_03085) recA 623756..624811 (-) 1056 WP_111388079.1 recombinase RecA Machinery gene
  INP97_RS03095 (INP97_03090) - 624948..625790 (-) 843 WP_197563159.1 patatin-like phospholipase family protein -
  INP97_RS03100 (INP97_03095) sxy/tfoX 626017..626685 (+) 669 WP_197563161.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25519.83 Da        Isoelectric Point: 10.2220

>NTDB_id=492981 INP97_RS03100 WP_197563161.1 626017..626685(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C147_1]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLFHKEKDMFAVWANNKVYLRAKDELSIKLKGLGCKPFATNELNKR
FVLSDYYALTESILKDNVLMRTLIILSISQIRKEKLDSALSKIGRIRDLPNLSVKYERALKKVGIDNVDTLRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLSKLNEILYANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=492981 INP97_RS03100 WP_197563161.1 626017..626685(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C147_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTAACAAG
TAAAAATCTATTTACGGGATATGGCTTGTTTCATAAAGAAAAAGATATGTTTGCTGTTTGGGCAAACAATAAGGTTTACT
TACGAGCTAAGGATGAGCTTTCGATAAAATTAAAAGGACTTGGCTGTAAACCTTTTGCAACAAATGAACTCAATAAACGC
TTCGTATTATCTGATTATTATGCTTTAACTGAAAGTATCTTGAAAGATAATGTTTTAATGAGAACCTTGATCATTCTTTC
TATCAGTCAAATCAGGAAGGAAAAATTAGATTCTGCACTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAAAGAGCTCTGAAGAAAGTGGGTATTGATAATGTTGATACCTTACGGCAAATAGGCGCTGAAAATGCGATT
GTTCGTTTGAAGAAAGCGGATATAGGGGCAACTGAAGCTTTCTATTGGCGGCTTCGAGGTGCTTTAGAGAATCGTAATTG
TGAGTTTTATACTGAAAAAGAGAAGGAAAGAGGTCTTAGTAAACTTAATGAAATACTTTATGCAAATGGGTTTAGACGTT
GTAAGCGGACCTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

59.903

93.243

0.559