Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP98_RS09195 Genome accession   NZ_CP063112
Coordinates   1916219..1916935 (-) Length   238 a.a.
NCBI ID   WP_083180196.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1911219..1921935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS09175 (INP98_09150) nrdR 1911332..1911781 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP98_RS09180 (INP98_09155) recC 1911859..1915218 (-) 3360 WP_197569955.1 exodeoxyribonuclease V subunit gamma -
  INP98_RS09185 (INP98_09160) comQ 1915256..1915522 (-) 267 WP_102704185.1 DUF5374 domain-containing protein Machinery gene
  INP98_RS09190 (INP98_09165) comP 1915536..1916222 (-) 687 WP_197569956.1 DUF2572 family protein Machinery gene
  INP98_RS09195 (INP98_09170) comO 1916219..1916935 (-) 717 WP_083180196.1 PulJ/GspJ family protein Machinery gene
  INP98_RS09200 (INP98_09175) comN 1916932..1917450 (-) 519 WP_197569957.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP98_RS09205 (INP98_09180) suhB 1917650..1918450 (+) 801 WP_005695663.1 inositol-1-monophosphatase -
  INP98_RS09210 (INP98_09185) bioB 1918495..1919511 (-) 1017 WP_197569958.1 biotin synthase BioB -
  INP98_RS09215 (INP98_09190) thiQ 1919585..1920214 (-) 630 WP_197569959.1 thiamine ABC transporter ATP-binding protein -
  INP98_RS09220 (INP98_09195) thiP 1920207..1921811 (-) 1605 WP_197569960.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26587.61 Da        Isoelectric Point: 7.9319

>NTDB_id=492962 INP98_RS09195 WP_083180196.1 1916219..1916935(-) (comO) [Haemophilus parainfluenzae strain M1C149_1]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQTELQRTIQLIGKDLRRVGFRSANQKLIEDNLAL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGKMIETKQTYKNAV
NADCRSAECQRALAQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLATHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=492962 INP98_RS09195 WP_083180196.1 1916219..1916935(-) (comO) [Haemophilus parainfluenzae strain M1C149_1]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGTTTGTTGATTTCACTTGGCTTATCCGCTTTATTATTGCTATTGGTTGC
ACAATTTTATGCCCAAACTCAACAGCAGAATCAGCGTTTAATGTTACAACTCAAACTACAAACGGAATTACAACGTACAA
TTCAACTCATCGGGAAAGATTTGCGTCGCGTAGGCTTTCGGAGCGCAAACCAAAAACTCATCGAGGATAATCTGGCTTTA
TTTGAATTGGATGAAAAGGGCACTGCAATAACCATTGCTCAAGCAGATAATGCCCCGTCAAATAGTTGTGTTTTGTTTTT
TTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGTGTTAAAAATGTGGCGA
AAAATATCGAAAAAGAGCTATTTGGTTACAAACTTAACGGGAAAATGATCGAAACCAAACAAACCTACAAAAATGCAGTA
AATGCAGATTGTCGCTCGGCAGAGTGTCAGAGAGCCTTAGCACAATCTACTTGTAACGCTGGTGGTGGATGGACTGATTT
ATTGGATGAAAAAGAGTTTGAGATCTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTGCAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

98.319

0.609