Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP98_RS06075 Genome accession   NZ_CP063112
Coordinates   1237982..1240384 (+) Length   800 a.a.
NCBI ID   WP_197569612.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1232982..1245384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS06055 (INP98_06050) dcuC 1233773..1235131 (+) 1359 WP_197569611.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP98_RS06060 (INP98_06055) folK 1235186..1235689 (-) 504 WP_014065105.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP98_RS06065 (INP98_06060) pcnB 1235689..1237047 (-) 1359 WP_269473896.1 polynucleotide adenylyltransferase PcnB -
  INP98_RS06070 (INP98_06065) dksA 1237283..1237720 (-) 438 WP_014065107.1 RNA polymerase-binding protein DksA -
  INP98_RS06075 (INP98_06070) rec2 1237982..1240384 (+) 2403 WP_197569612.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP98_RS06080 (INP98_06075) msbA 1240422..1242185 (+) 1764 WP_197569613.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP98_RS06085 (INP98_06080) lpxK 1242239..1243222 (+) 984 WP_197569614.1 tetraacyldisaccharide 4'-kinase -
  INP98_RS06090 (INP98_06085) - 1243239..1243418 (+) 180 WP_197569615.1 Trm112 family protein -
  INP98_RS06095 (INP98_06090) kdsB 1243428..1244186 (+) 759 WP_197569616.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90026.46 Da        Isoelectric Point: 9.2846

>NTDB_id=492958 INP98_RS06075 WP_197569612.1 1237982..1240384(+) (rec2) [Haemophilus parainfluenzae strain M1C149_1]
MKLTLFQLCIMLIVSAFSLLVVPDFLLFTWQRAGLSILLLVMTAFCFHWFNYFKVKNFCINGIWFLLTLAYVHSQALSLL
TQAEKISSLPNKVTLDLYISEILHQQDYQTLVAMTSLFDGKEQQIFINWRAPEKPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGEDFSYRTDFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLVYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLALPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALFFIAILQFSRRYYTPLQMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIFEWQHQKLSNKVRWILGLFHLQLGLLILFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTNGAFSSWYLSNAIAQGVTQCLSFFQGSYIPISINLSLILTALLSLIFGGML
GGLYFASQAQTKNTPLKSSRFFTLNNTKILSSKAYKQALLDVILISSFCIGTLGYRYFMKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGASSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYPEIELITPSRKNYGETHRT
FCLQGKQWQWGGLDIKILSPKQITDRAENPQSCVILFTDGQYQILLTGDADVATEKSFAEKLGKINVLQVGHHGSKTSTG
EFLLAQTKPDIALISSGRWNAWNFPHTTVIERLNRYQSAVENTAISGHIRLKFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=492958 INP98_RS06075 WP_197569612.1 1237982..1240384(+) (rec2) [Haemophilus parainfluenzae strain M1C149_1]
ATGAAACTCACGTTATTTCAACTGTGCATCATGCTCATCGTTTCAGCCTTTTCTTTGCTTGTCGTGCCTGATTTTTTACT
GTTTACCTGGCAACGAGCGGGGCTGAGCATTTTATTGTTGGTTATGACCGCATTTTGTTTCCATTGGTTCAATTATTTTA
AAGTCAAAAATTTTTGCATTAACGGCATTTGGTTTTTGCTTACTTTAGCTTACGTGCATTCACAAGCCTTGTCGTTATTG
ACTCAAGCAGAAAAAATTTCAAGTTTACCGAATAAAGTCACGTTAGATCTTTACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACGTTGGTTGCGATGACGTCTTTATTTGATGGGAAAGAACAACAAATTTTTATTAATTGGAGAGCACCAGAAA
AACCACAACTTGGCGAAGTTTGGCGGGCGGATGTAAAGCTTCGTCCTATTTCGGCGAGATTAAACCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGGGAAGATTTTTC
TTACCGCACCGATTTTCTACAGAATAGCCTCAAACAGACGGAAGGGCTTTCTTTACAAGGTTTACTTATCGCATTGGCAT
TTGGTGAGCGAGCTTGGCTAGATAATAAAACATGGTTGGTTTATCAACAAACGAATACAGCACATTTGATTGCTATTTCA
GGATTACATATCGGTTTAGCCATGGGTATAGGCTTTTTCTTTGCGCGATTATTGCAACTCGCACTGCCTACACGCTTTAT
TTCGCCCTGGTTTCCGCTTTGCTTTGGCGTGTTGATTGCTTTAGGTTACGCCTATTTAGCCGGATTTAGTTTACCGACCT
TCCGTGCAATGATGGCATTATTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTTGCAAATGCTTTGT
TTAGTGGTGGCGTTTTTACTGTTTTGTGATCCACTTATGCCACTTTCGGTGAGCTTTTGGCTTTCAGTTGGAGCTGTTAC
CTGTTTGATTGTGTGGTACCGATATGTTCCCTTATCAATCTTTGAGTGGCAGCATCAAAAATTATCCAACAAAGTGCGGT
GGATTTTAGGCTTGTTTCATTTGCAGTTAGGGCTGCTAATTTTATTCACGCCCATTCAGCTTTTCTTCTTTAATGGCTTG
GCGTTAAATGGATTCTTGGCGAATTTAATTGCAGTGCCCTTGTATAGTTTCTTACTTGTACCCTTGATTCTCTTTGCGGT
GTTGACCAATGGTGCATTTTCTTCTTGGTATCTTTCAAATGCGATTGCTCAAGGTGTTACACAATGCCTCAGTTTTTTTC
AAGGCTCGTATATACCGATTTCGATTAATTTATCCCTCATTCTGACCGCACTTTTAAGCCTTATTTTTGGTGGGATGTTA
GGTGGATTGTATTTTGCATCTCAAGCTCAAACAAAAAATACACCGTTAAAATCGAGTCGATTTTTCACATTAAATAACAC
AAAAATCTTATCGTCAAAAGCTTATAAGCAAGCTCTTTTAGACGTTATTCTTATTTCTAGTTTTTGTATTGGCACGCTTG
GGTATCGATATTTTATGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGACAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGAAAAGGCGTGTTGTATGATACGGGGCCCGCTTGGCAGAGTGGAATAGGGGCTTCTTCCATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGGGAAGGGATTGAACTTGAAACCTTGATTTTAAGCCATGATGATAACGATCATTCGGGTGGCG
CTAAAGCGATTTTAGCCGCATATCCAGAGATTGAACTGATTACACCTTCTCGCAAAAACTATGGTGAAACGCACCGCACT
TTTTGTCTTCAGGGAAAACAATGGCAGTGGGGAGGACTTGATATTAAAATTCTTTCACCAAAACAAATTACAGACAGGGC
GGAGAATCCTCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAGATCCTTTTAACCGGTGATGCTGATGTGGCAA
CAGAAAAATCTTTTGCTGAAAAACTAGGCAAAATTAATGTGTTACAGGTGGGACATCATGGTAGTAAAACCTCAACAGGC
GAGTTTTTACTGGCACAGACAAAACCGGATATCGCTTTAATTTCAAGTGGGCGGTGGAATGCGTGGAATTTTCCTCATAC
AACCGTAATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACGGCTATTTCGGGCCATATTAGGTTAAAATTTA
CTGAAAAAGGGATTGAAATTGAAAAGGCGAGAGGGGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(30-179)

Competence protein (Competence)

(212-478)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.424

100

0.605