Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP98_RS04875 Genome accession   NZ_CP063112
Coordinates   1002409..1003362 (+) Length   317 a.a.
NCBI ID   WP_269473894.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C149_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 997409..1008362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP98_RS04855 (INP98_04850) accA 997996..998943 (-) 948 WP_049368033.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP98_RS04860 (INP98_04855) znuB 999031..999816 (-) 786 WP_005696720.1 zinc ABC transporter permease subunit ZnuB -
  INP98_RS04865 (INP98_04860) znuC 999826..1000620 (-) 795 WP_049370526.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP98_RS04870 (INP98_04865) mepM 1000799..1002274 (+) 1476 WP_197570492.1 murein DD-endopeptidase MepM -
  INP98_RS04875 (INP98_04870) ceuB 1002409..1003362 (+) 954 WP_269473894.1 ABC transporter permease Machinery gene
  INP98_RS04880 (INP98_04875) - 1003355..1004314 (+) 960 WP_049380439.1 iron chelate uptake ABC transporter family permease subunit -
  INP98_RS04885 (INP98_04880) - 1004305..1005066 (+) 762 WP_197570493.1 ABC transporter ATP-binding protein -
  INP98_RS04890 (INP98_04885) - 1005081..1005989 (+) 909 WP_197541741.1 siderophore ABC transporter substrate-binding protein -
  INP98_RS04895 (INP98_04890) - 1006110..1007060 (+) 951 WP_197541742.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34976.18 Da        Isoelectric Point: 10.2040

>NTDB_id=492955 INP98_RS04875 WP_269473894.1 1002409..1003362(+) (ceuB) [Haemophilus parainfluenzae strain M1C149_1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492955 INP98_RS04875 WP_269473894.1 1002409..1003362(+) (ceuB) [Haemophilus parainfluenzae strain M1C149_1]
ATGATTAAGAGACGTTATCTGATTTTTCTGTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTGCAAGGATTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATTT
TGATTGCTGGTGCATCCTTGAGTATTTGTGGTTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCACCCACCACT
GCGGGCACAATGGATAGTGCAAGATTAGGCATTTTAATTGCGATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CACTATTGCGGTCATCGTGTCTTTCCTTGGCACATTGTTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCATTAGTCGGGATTATGTTTGGTAATATCATCAGTTCAATTACCGCCTTTATTGCTTACAAAGAAGATTTA
TTACAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCTGGTCGCTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATTGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTTTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTCGGC
GTGATCCCTTTCTTGGGGCTAATTATTCCGAATATCGTCACACTTTATTTAGGTGATAACTTGAAGAAAGTGTTATCTCA
TACCGCCTTGCTAGGCGCCGTATTTGTTTTATTCTGCGATATTTTAGGGCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTAGGTGTATTTGGTAGTGGTATCTTCTTATTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.987

97.476

0.546