Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INP99_RS09175 Genome accession   NZ_CP063111
Coordinates   1916043..1916759 (-) Length   238 a.a.
NCBI ID   WP_420026432.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1911043..1921759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS09155 (INP99_09145) nrdR 1911156..1911605 (-) 450 WP_005695670.1 transcriptional regulator NrdR -
  INP99_RS09160 (INP99_09150) recC 1911683..1915042 (-) 3360 WP_197542239.1 exodeoxyribonuclease V subunit gamma -
  INP99_RS09165 (INP99_09155) comQ 1915080..1915346 (-) 267 WP_197542925.1 DUF5374 domain-containing protein Machinery gene
  INP99_RS09170 (INP99_09160) comP 1915360..1916046 (-) 687 WP_197542240.1 DUF2572 family protein Machinery gene
  INP99_RS09175 (INP99_09165) comO 1916043..1916759 (-) 717 WP_420026432.1 hypothetical protein Machinery gene
  INP99_RS09180 (INP99_09170) comN 1916756..1917274 (-) 519 WP_197542242.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INP99_RS09185 (INP99_09175) suhB 1917475..1918275 (+) 801 WP_049355386.1 inositol-1-monophosphatase -
  INP99_RS09190 (INP99_09180) bioB 1918321..1919337 (-) 1017 WP_102704187.1 biotin synthase BioB -
  INP99_RS09195 (INP99_09185) thiQ 1919411..1920040 (-) 630 WP_197542243.1 thiamine ABC transporter ATP-binding protein -
  INP99_RS09200 (INP99_09190) thiP 1920033..1921637 (-) 1605 WP_197542244.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26589.58 Da        Isoelectric Point: 7.5545

>NTDB_id=492930 INP99_RS09175 WP_420026432.1 1916043..1916759(-) (comO) [Haemophilus parainfluenzae strain M1C152_1]
MKLLKGETLVSLLVSLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRAANQKLIEDNLAL
FELDEKGTAITIAQADNAPSNSCVLFFYDLNSNGCIGEKYTKNTCVNGVKNVAKNIEKELFGYKLNGNMIETKQTYKNAV
NADCRSAECQRALTQSTCNAGGGWTDLLDEKEFEISQLRFDWLKAGKGIEIKLAGNLTTHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=492930 INP99_RS09175 WP_420026432.1 1916043..1916759(-) (comO) [Haemophilus parainfluenzae strain M1C152_1]
ATGAAACTATTAAAAGGCGAAACATTGGTAAGTTTATTGGTTTCACTCGGCTTATCCGCTTTATTATTGTTATTGGTTGC
ACAGTTTTATGCCCAAACTCAACAGCAAAATCAGCGTTTAATGTTACAACTTAAATTACAAGCGGAATTACAACGCACAA
TTCAACTCATCGGGAAAGATCTGCGTCGCGTAGGCTTTCGAGCCGCAAACCAAAAACTCATCGAAGATAATCTGGCTTTA
TTCGAATTAGACGAAAAGGGCACAGCAATAACCATTGCTCAAGCAGACAATGCACCATCAAATAGTTGTGTTTTATTTTT
TTATGATTTGAATAGCAATGGTTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCGTTAAAAATGTGGCAA
AAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGGGAATATGATCGAAACCAAACAAACCTATAAAAATGCGGTA
AATGCAGATTGTCGCTCAGCAGAGTGTCAGCGTGCTTTAACGCAATCTACTTGTAACGCGGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGAGATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTACAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

62.128

98.739

0.613