Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INP99_RS06080 Genome accession   NZ_CP063111
Coordinates   1231381..1233783 (+) Length   800 a.a.
NCBI ID   WP_197541863.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226381..1238783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS06060 (INP99_06050) dcuC 1227170..1228528 (+) 1359 WP_049384443.1 anaerobic C4-dicarboxylate transporter DcuC -
  INP99_RS06065 (INP99_06055) folK 1228583..1229086 (-) 504 WP_197541862.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INP99_RS06070 (INP99_06060) pcnB 1229086..1230444 (-) 1359 WP_269473905.1 polynucleotide adenylyltransferase PcnB -
  INP99_RS06075 (INP99_06065) dksA 1230680..1231117 (-) 438 WP_014065107.1 RNA polymerase-binding protein DksA -
  INP99_RS06080 (INP99_06070) rec2 1231381..1233783 (+) 2403 WP_197541863.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INP99_RS06085 (INP99_06075) msbA 1233821..1235584 (+) 1764 WP_197541864.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INP99_RS06090 (INP99_06080) lpxK 1235638..1236618 (+) 981 WP_065244352.1 tetraacyldisaccharide 4'-kinase -
  INP99_RS06095 (INP99_06085) - 1236636..1236815 (+) 180 WP_005696424.1 Trm112 family protein -
  INP99_RS06100 (INP99_06090) kdsB 1236825..1237589 (+) 765 WP_197541865.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  INP99_RS06105 (INP99_06095) - 1237764..1238717 (+) 954 WP_197541866.1 hypothetical protein -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 89749.25 Da        Isoelectric Point: 9.2422

>NTDB_id=492926 INP99_RS06080 WP_197541863.1 1231381..1233783(+) (rec2) [Haemophilus parainfluenzae strain M1C152_1]
MKITLFQLCMMLIVSALSLLVVPDFLLLTWQQAGLSILMLVMTALCFHWFNYFKARNFCISSILFLLTLAYAHSSALSLL
GQAERISSLPNKITLDLHISEILHQQDYQTLVATASLFDGKEQKIFINWRASEKPQLGEVWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIVEDFSYRTDFLQNSLKQTEGLSLQGLLIALAFGERAWLDNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLSLPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQFSRRYYTPLQMLC
LVVAFLLFCEPLMPLSVSFWLSVGAVACLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQLGLLILFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTHGAFSSWHFSNAIAQGITQCLRVFQGSYMPISINLSLILIALLSLVFGGML
GGLYFASQGKTKNIPLKSSQFFTLNHTKILSLEEYKQALLGVILVFGVCIGSFGYRYLTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQSGIGGSSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAASPDIELITPSRKNYGETPRT
FCLQGKQWRWRELDFKILSPAQITDRAENPQSCVILFTDGQYQILLTGDADVATERSFAEKAGKINVLQVGHHGSKTSTG
EFLLGQIKPDIALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=492926 INP99_RS06080 WP_197541863.1 1231381..1233783(+) (rec2) [Haemophilus parainfluenzae strain M1C152_1]
ATGAAAATCACGCTATTTCAACTGTGCATGATGCTCATTGTCTCAGCCTTATCCTTGCTTGTCGTGCCAGATTTTTTACT
GCTCACTTGGCAACAGGCTGGGCTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATAAGTAGTATCTTGTTTTTACTTACTTTGGCTTATGCGCATTCATCAGCCTTATCGTTATTG
GGACAAGCAGAGAGAATTTCAAGTTTACCGAATAAAATCACCTTAGATCTCCACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACGTTGGTTGCTACGGCGTCTTTATTTGATGGGAAAGAACAAAAAATTTTTATTAATTGGAGAGCGTCAGAAA
AACCACAACTTGGCGAAGTTTGGCGGGCGGATGTAAAGCTTCGCCCTATTTCGGCGAGATTAAACCATGGGGGATTTGAT
CGACAGCAATGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGTGGAAGATTTTTC
TTACCGCACAGATTTTCTACAGAATAGCCTCAAGCAGACGGAAGGGCTTTCTTTACAAGGTTTGCTTATTGCATTGGCAT
TTGGTGAGCGGGCTTGGTTAGATAATAAAACGTGGCTGATTTACCAACAAACGAATACAGCACATTTAATTGCCATTTCA
GGACTCCATATCGGTTTAGCAATGGGGATAGGCTTTTTCTTTGCTCGATTATTGCAACTCTCACTGCCTACACGCTTTAT
TTCACCCTGGTTTCCGCTTTGCTTTGGTGTGTTGATTGCCTTAGGTTACGCCTATTTAGCTGGATTTAGTTTACCGACTT
TTCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATTTTCGCGACGATATTACACGCCTTTACAAATGCTGTGT
TTGGTGGTGGCATTTTTGCTTTTTTGTGAGCCGCTTATGCCGCTTTCGGTGAGCTTTTGGCTTTCAGTTGGTGCAGTTGC
CTGTCTGATTGTGTGGTATCGATATGTTCCCTTATCAATCATTGAATGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTAGGCTTGTTTCATTTGCAGTTAGGGCTGTTGATTTTATTCACGCCTATTCAGCTTTTCTTTTTTAATGGCTTG
GCATTAAATGGGTTCTTAGCAAATTTAATTGCAGTGCCCTTGTATAGTTTTTTACTTGTGCCCTTGATTCTATTTGCGGT
GTTGACCCATGGTGCATTTTCTTCTTGGCATTTTTCAAATGCAATTGCTCAAGGTATTACACAATGCCTCCGTGTTTTCC
AAGGCTCGTATATGCCGATTTCGATCAATTTATCCCTCATTCTGATCGCTCTTTTAAGCCTTGTTTTTGGTGGCATGTTA
GGTGGATTGTATTTTGCATCTCAAGGGAAAACAAAAAATATACCACTAAAATCAAGTCAATTTTTTACGTTAAATCATAC
AAAAATCTTATCGCTAGAAGAGTATAAACAAGCTCTATTGGGTGTAATTCTTGTTTTTGGTGTTTGTATTGGTTCGTTTG
GATATCGATATCTCACGAAACCCAAATGGCAGTTAGATACCTTAGATGTTGGACAAGGTTTAGCAACATTAATTGTGAAA
GAGGGGAAAGGTGTGTTGTATGACACGGGGCCAGCTTGGCAGAGTGGAATAGGTGGCTCTTCTATGGCGGAATTAGAAAT
ATTGCCTTATCTTCAACGAGAAGGCATTGAGCTTGAAACCTTGATTTTAAGCCATGATGATAATGATCATTCAGGCGGCG
CTAAAGCGATTTTAGCCGCATCCCCAGACATTGAACTGATTACACCTTCTCGTAAAAACTATGGCGAAACGCCCCGCACT
TTTTGTCTTCAGGGGAAACAATGGCGGTGGCGAGAACTTGATTTTAAAATTCTTTCGCCAGCGCAAATTACAGACAGGGC
GGAGAATCCTCAATCTTGCGTGATTTTATTCACGGATGGACAGTATCAAATTCTTTTAACTGGTGATGCTGATGTGGCAA
CAGAAAGATCTTTTGCTGAAAAAGCAGGTAAGATCAACGTGTTACAGGTAGGGCACCATGGCAGTAAAACTTCAACTGGC
GAGTTTTTACTGGGGCAGATAAAACCGGATATCGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACAGTCATTGAACGATTAAATCGTTATCAAAGTGCGGTCGAAAATACGGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAAGGCATTGAAATTGAAAAGGCGAGAGGGGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-478)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-736)

Domain of unknown function (DUF4131) (DUF4131)

(30-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.323

100

0.606