Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INP99_RS05035 Genome accession   NZ_CP063111
Coordinates   1024794..1025747 (+) Length   317 a.a.
NCBI ID   WP_070868755.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C152_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1019794..1030747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP99_RS05015 (INP99_05010) accA 1020382..1021329 (-) 948 WP_049369151.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INP99_RS05020 (INP99_05015) znuB 1021417..1022202 (-) 786 WP_005699689.1 zinc ABC transporter permease subunit ZnuB -
  INP99_RS05025 (INP99_05020) znuC 1022212..1023006 (-) 795 WP_065242813.1 zinc ABC transporter ATP-binding protein ZnuC -
  INP99_RS05030 (INP99_05025) mepM 1023185..1024660 (+) 1476 WP_197541738.1 murein DD-endopeptidase MepM -
  INP99_RS05035 (INP99_05030) ceuB 1024794..1025747 (+) 954 WP_070868755.1 ABC transporter permease Machinery gene
  INP99_RS05040 (INP99_05035) - 1025740..1026699 (+) 960 WP_197541739.1 iron chelate uptake ABC transporter family permease subunit -
  INP99_RS05045 (INP99_05040) - 1026690..1027451 (+) 762 WP_197541740.1 ABC transporter ATP-binding protein -
  INP99_RS05050 (INP99_05045) - 1027466..1028374 (+) 909 WP_197541741.1 siderophore ABC transporter substrate-binding protein -
  INP99_RS05055 (INP99_05050) - 1028495..1029445 (+) 951 WP_197541742.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34998.20 Da        Isoelectric Point: 10.2040

>NTDB_id=492924 INP99_RS05035 WP_070868755.1 1024794..1025747(+) (ceuB) [Haemophilus parainfluenzae strain M1C152_1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFFISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTAIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492924 INP99_RS05035 WP_070868755.1 1024794..1025747(+) (ceuB) [Haemophilus parainfluenzae strain M1C152_1]
ATGATTAAGCGGCGTTATCTGATTTTTCTTTTAATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACCGTTAA
TTTACAAGGATTACTGAATTTTGAAGGTAATCAGTGGCAGATTTTTTTCATCAGTCGTGTGCCACGTTTAATCAGTATCT
TGATTGCGGGTGCATCCTTGAGTATTTGTGGTTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACG
GCGGGCACAATGGACAGCGCACGATTAGGCATTTTAATGGCCATGCTGTTTTTCCCAACAGCTTCAATGTTGTTAAAAAC
CGCCATTGCGGTCATCGTGTCTTTCCTTGGCACATTATTATTTATGACGATTCTGTCCCGTTTGAAATTCAAGGACACGA
TTTTTGTGCCCTTAGTGGGGATTATGTTTGGTAATATCATCAGTTCAATTACTGCCTTTATCGCTTATAAAGAAGATCTA
TTGCAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATCGTGGCTTATTTATTTGCCCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCGGTTAATCTAG
GTCTAAATTACAACCAGGTACTTTATCTCGGTCTGCTCATTGTGGCGGTGGTGTCTTCGATTATTATCGTGTCTGTTGGG
GTGATCCCTTTCTTGGGGCTAATTATTCCAAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACCGCTTTGCTAGGTGCCGTCTTTGTCTTATTCTGTGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTGGTTGGTGTATTTGGTAGTGGTATCTTCTTATTTTTATTATTAAAACGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543