Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   INQ00_RS09220 Genome accession   NZ_CP063110
Coordinates   1918562..1919278 (-) Length   238 a.a.
NCBI ID   WP_197547530.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1913562..1924278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS09200 (INQ00_09200) nrdR 1913675..1914124 (-) 450 WP_197546863.1 transcriptional regulator NrdR -
  INQ00_RS09205 (INQ00_09205) recC 1914202..1917561 (-) 3360 WP_197546864.1 exodeoxyribonuclease V subunit gamma -
  INQ00_RS09210 (INQ00_09210) comQ 1917599..1917865 (-) 267 WP_197547529.1 DUF5374 domain-containing protein Machinery gene
  INQ00_RS09215 (INQ00_09215) comP 1917879..1918565 (-) 687 WP_197546865.1 DUF2572 family protein Machinery gene
  INQ00_RS09220 (INQ00_09220) comO 1918562..1919278 (-) 717 WP_197547530.1 PulJ/GspJ family protein Machinery gene
  INQ00_RS09225 (INQ00_09225) comN 1919275..1919793 (-) 519 WP_197542242.1 prepilin-type cleavage/methylation domain-containing protein Machinery gene
  INQ00_RS09230 (INQ00_09230) suhB 1919994..1920794 (+) 801 WP_111315483.1 inositol-1-monophosphatase -
  INQ00_RS09235 (INQ00_09235) bioB 1920840..1921856 (-) 1017 WP_102704187.1 biotin synthase BioB -
  INQ00_RS09240 (INQ00_09240) thiQ 1921930..1922559 (-) 630 WP_197546866.1 thiamine ABC transporter ATP-binding protein -
  INQ00_RS09245 (INQ00_09245) thiP 1922552..1924156 (-) 1605 WP_197546867.1 thiamine/thiamine pyrophosphate ABC transporter permease ThiP -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26613.65 Da        Isoelectric Point: 7.5544

>NTDB_id=492899 INQ00_RS09220 WP_197547530.1 1918562..1919278(-) (comO) [Haemophilus parainfluenzae strain M1C160_1]
MKPLKGETLVSLLISLGLSALLLLLVAQFYAQTQQQNQRLMLQLKLQAELQRTIQLIGKDLRRVGFRAANQKLIEDNLAL
FELDEKGTAITIAQADNAPLNSCVLFFYDLNSNGCIGEKYTKNTCVNGIKNVAKNIEKELFGYKLNGNMIETKQTYKNAV
NADCRSAECQRALTQSTCNAGGGWTDLLDEKEFDISQLRFDWLKAGKGIEIKLAGNLTTHKHIQYETSLVVPLLNQEE

Nucleotide


Download         Length: 717 bp        

>NTDB_id=492899 INQ00_RS09220 WP_197547530.1 1918562..1919278(-) (comO) [Haemophilus parainfluenzae strain M1C160_1]
ATGAAACCATTAAAAGGCGAAACATTGGTGAGCTTATTGATTTCACTCGGCTTATCCGCTTTATTATTGTTATTGGTTGC
TCAATTTTATGCCCAAACTCAGCAGCAAAATCAGCGTTTAATGTTACAACTCAAATTACAAGCTGAATTACAACGCACAA
TTCAACTCATCGGGAAAGATCTGCGCCGCGTAGGCTTTCGAGCCGCAAACCAAAAACTCATCGAAGATAATCTCGCTTTA
TTTGAATTAGACGAAAAGGGCACAGCAATAACCATTGCTCAAGCAGACAATGCGCCATTAAATAGTTGTGTCTTGTTTTT
TTATGATTTGAATAGTAATGGCTGTATTGGTGAAAAATACACAAAAAATACCTGCGTAAATGGCATTAAAAATGTGGCAA
AAAATATCGAAAAGGAGCTATTTGGTTACAAACTTAACGGGAATATGATCGAAACCAAACAAACCTATAAAAATGCGGTA
AATGCAGATTGTCGCTCAGCAGAGTGTCAGCGTGCTTTAACGCAATCTACTTGTAACGCGGGTGGTGGATGGACAGATTT
ATTGGATGAAAAAGAGTTTGATATTTCTCAATTACGTTTTGATTGGTTAAAGGCAGGGAAAGGGATTGAAATCAAACTCG
CGGGAAATCTTACAACACATAAGCATATTCAATATGAAACTTCGCTTGTGGTGCCTTTATTAAATCAAGAAGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

61.966

98.319

0.609