Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   INQ00_RS06110 Genome accession   NZ_CP063110
Coordinates   1232695..1235097 (+) Length   800 a.a.
NCBI ID   WP_197546508.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1227695..1240097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS06090 (INQ00_06095) dcuC 1228485..1229843 (+) 1359 WP_197546507.1 anaerobic C4-dicarboxylate transporter DcuC -
  INQ00_RS06095 (INQ00_06100) folK 1229898..1230401 (-) 504 WP_014065105.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  INQ00_RS06100 (INQ00_06105) pcnB 1230401..1231759 (-) 1359 WP_269473888.1 polynucleotide adenylyltransferase PcnB -
  INQ00_RS06105 (INQ00_06110) dksA 1231995..1232432 (-) 438 WP_049370154.1 RNA polymerase-binding protein DksA -
  INQ00_RS06110 (INQ00_06115) rec2 1232695..1235097 (+) 2403 WP_197546508.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  INQ00_RS06115 (INQ00_06120) msbA 1235150..1236898 (+) 1749 WP_197546509.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  INQ00_RS06120 (INQ00_06125) lpxK 1236952..1237932 (+) 981 WP_197546510.1 tetraacyldisaccharide 4'-kinase -
  INQ00_RS06125 (INQ00_06130) - 1237950..1238129 (+) 180 WP_111326848.1 Trm112 family protein -
  INQ00_RS06130 (INQ00_06135) kdsB 1238139..1238897 (+) 759 WP_197546511.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 90009.68 Da        Isoelectric Point: 9.5495

>NTDB_id=492895 INQ00_RS06110 WP_197546508.1 1232695..1235097(+) (rec2) [Haemophilus parainfluenzae strain M1C160_1]
MKLTLFQLCIMLIISAFSLLIVPDFLLFTWQRAGLSILMLVMTALCFHWFNYFKARNFCISSILFLLTLAYAHSSALSLL
GQAERISSLPNKITLDLHISEILHQQDYQTLIATSSLFDGKVQQIFINWKAPEKPQLGEIWRADVKLRPISARLNHGGFD
RQQWYFSKRIIAVGNVKSAVKIGDDFSYRTDFLQNSLKQTEGLSLQGLLIALAFGERAWLNNKTWLIYQQTNTAHLIAIS
GLHIGLAMGIGFFFARLLQLSLPTRFISPWFPLCFGVLIALGYAYLAGFSLPTFRAMMALLFIAILQCSRRYYTPSQMLC
LVVAFLLFCDPLMPLSVSFWLSVGAVTCLIVWYRYVPLSIIEWQHQKLSRKVRWILGLFHLQIGLLILFTPIQLFFFNGL
ALNGFLANLIAVPLYSFLLVPLILFAVLTHGAFSSWHLSNAIAQGITQCLSVFQGSYMPISINLSLILTALLSLIFGRML
GGLYFASQGKTKNTPLKSSRFFTLNHTKILSPKDYKQALRCVIFIFCICINALGYRYLTKPKWQLDTLDVGQGLATLIVK
EGKGVLYDTGPAWQNGIGASSMAELEILPYLQREGIELETLILSHDDNDHSGGAKAILAAYRDIELITPSRKNYGETHRT
FCLQGKQWLWRGLDFKVLSPTQITDRAENPQSCVILLTDGQYKILLTGDADVATERAFAENIGKINVLQVGHHGSKTSTG
EFLLALTKPDLALISSGRWNAWNFPHPTVIERLNRYQSAVENTAISGHIRLNFTEKGIEIEKARGDFSPWFARVIGLSPK

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=492895 INQ00_RS06110 WP_197546508.1 1232695..1235097(+) (rec2) [Haemophilus parainfluenzae strain M1C160_1]
ATGAAACTCACGTTATTTCAACTGTGCATCATGCTCATCATTTCAGCCTTTTCTTTGCTTATCGTGCCTGATTTTTTACT
GTTTACCTGGCAACGAGCGGGGCTGAGCATTTTAATGTTGGTTATGACCGCACTTTGTTTCCATTGGTTCAATTATTTTA
AAGCCAGAAATTTTTGCATAAGTAGTATCTTGTTTTTACTTACTTTGGCTTATGCGCATTCATCAGCCTTATCGTTATTG
GGACAAGCAGAGAGAATTTCAAGTTTACCGAATAAAATCACCTTAGATCTCCACATCTCAGAAATTCTTCATCAGCAAGA
TTATCAAACCTTGATTGCGACGAGCTCTTTATTTGATGGAAAAGTACAACAAATTTTTATTAATTGGAAAGCACCAGAAA
AGCCACAGTTAGGGGAAATTTGGCGGGCGGATGTAAAGCTTCGCCCTATTTCGGCGAGATTAAACCATGGGGGATTTGAT
CGACAGCAGTGGTATTTTTCCAAAAGAATTATTGCCGTAGGGAATGTGAAAAGTGCGGTCAAAATTGGAGACGATTTTTC
TTACCGCACAGATTTTCTACAGAATAGCCTCAAACAGACGGAAGGGCTTTCTTTGCAAGGCTTGCTTATTGCATTGGCAT
TTGGCGAGCGGGCTTGGCTGAATAATAAAACGTGGTTGATTTATCAACAAACGAATACAGCACATTTAATTGCTATTTCA
GGACTCCATATCGGTTTAGCAATGGGGATAGGCTTTTTCTTTGCTCGATTATTGCAACTCTCACTGCCTACACGTTTTAT
TTCGCCCTGGTTTCCGCTTTGCTTTGGTGTGTTGATTGCTTTAGGTTATGCCTATTTAGCCGGATTTAGTTTACCGACCT
TTCGTGCAATGATGGCATTGCTTTTTATTGCAATCCTTCAATGTTCTCGACGATATTACACGCCTTCGCAAATGCTGTGT
TTGGTGGTGGCATTTTTGCTTTTTTGTGATCCGCTTATGCCACTTTCGGTTAGCTTTTGGCTTTCAGTTGGTGCTGTTAC
CTGTTTGATTGTATGGTACCGATATGTTCCCTTATCAATCATTGAATGGCAACATCAAAAATTATCCCGCAAAGTGCGGT
GGATTTTAGGATTGTTTCATTTGCAGATTGGTTTGTTGATTTTATTCACACCTATTCAGCTTTTCTTTTTTAATGGCTTG
GCATTAAATGGGTTCTTAGCAAATTTAATTGCAGTGCCCTTGTATAGCTTCTTACTTGTACCCTTGATTCTCTTTGCGGT
GTTGACCCATGGTGCATTTTCTTCTTGGCATCTTTCAAATGCGATTGCTCAAGGTATTACACAATGCCTCAGTGTTTTCC
AAGGCTCGTATATGCCGATTTCGATTAATTTATCTCTTATTCTGACCGCACTTTTAAGCCTTATTTTTGGCAGAATGTTA
GGTGGATTGTATTTTGCATCTCAAGGGAAAACAAAAAATACACCGCTAAAATCGAGTCGATTTTTTACGTTAAATCATAC
AAAAATCTTATCGCCAAAAGATTATAAGCAAGCGCTTCGTTGTGTCATTTTTATTTTCTGTATTTGTATTAATGCTCTAG
GGTATCGATATCTCACGAAACCCAAATGGCAGTTAGATACGTTAGATGTTGGTCAAGGTTTAGCAACCTTAATTGTGAAA
GAGGGGAAAGGCGTGTTGTATGACACAGGGCCTGCTTGGCAGAATGGAATAGGGGCATCTTCCATGGCAGAATTGGAAAT
ATTACCTTATCTTCAACGGGAAGGCATTGAGCTTGAAACTTTGATTTTAAGCCATGATGATAACGATCATTCAGGTGGTG
CTAAAGCGATTTTAGCCGCATACCGAGACATTGAACTGATTACACCTTCTCGTAAAAACTACGGCGAAACGCACCGCACT
TTTTGTCTTCAGGGGAAACAATGGCTGTGGCGAGGACTTGATTTTAAAGTTCTTTCACCAACGCAAATAACAGATAGAGC
GGAGAATCCGCAATCTTGCGTAATTTTACTAACAGATGGACAGTACAAGATCCTTTTAACCGGTGATGCGGATGTGGCGA
CAGAAAGAGCATTTGCTGAAAACATAGGCAAAATTAATGTGTTACAAGTGGGGCATCATGGTAGTAAAACTTCAACAGGC
GAGTTTTTATTGGCTCTGACGAAACCTGATCTTGCCTTAATTTCAAGTGGACGATGGAATGCGTGGAATTTTCCTCATCC
AACCGTGATTGAACGGTTAAATCGTTATCAAAGTGCGGTCGAAAATACCGCTATTTCAGGTCATATAAGGTTAAATTTTA
CTGAAAAGGGCATTGAAATTGAAAAGGCGAGAGGAGATTTTTCACCTTGGTTTGCCCGTGTAATTGGATTATCCCCGAAA
TAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-179)

Metallo-beta-lactamase superfamily (Lactamase_B)

(549-735)

Competence protein (Competence)

(212-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

60.924

100

0.61