Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   INQ00_RS05080 Genome accession   NZ_CP063110
Coordinates   1030108..1031061 (+) Length   317 a.a.
NCBI ID   WP_269473878.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1025108..1036061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS05060 (INQ00_05065) accA 1025695..1026642 (-) 948 WP_070775685.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  INQ00_RS05065 (INQ00_05070) znuB 1026730..1027515 (-) 786 WP_005699689.1 zinc ABC transporter permease subunit ZnuB -
  INQ00_RS05070 (INQ00_05075) znuC 1027525..1028319 (-) 795 WP_049370526.1 zinc ABC transporter ATP-binding protein ZnuC -
  INQ00_RS05075 (INQ00_05080) mepM 1028498..1029973 (+) 1476 WP_197546400.1 murein DD-endopeptidase MepM -
  INQ00_RS05080 (INQ00_05085) ceuB 1030108..1031061 (+) 954 WP_269473878.1 ABC transporter permease Machinery gene
  INQ00_RS05085 (INQ00_05090) - 1031054..1032013 (+) 960 WP_070775689.1 iron chelate uptake ABC transporter family permease subunit -
  INQ00_RS05090 (INQ00_05095) - 1032004..1032765 (+) 762 WP_197546401.1 ABC transporter ATP-binding protein -
  INQ00_RS05095 (INQ00_05100) - 1032780..1033688 (+) 909 WP_197546402.1 siderophore ABC transporter substrate-binding protein -
  INQ00_RS05100 (INQ00_05105) - 1033809..1034759 (+) 951 WP_197546403.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34994.21 Da        Isoelectric Point: 10.2040

>NTDB_id=492893 INQ00_RS05080 WP_269473878.1 1030108..1031061(+) (ceuB) [Haemophilus parainfluenzae strain M1C160_1]
MIKRRYLIFLLIVLSFVSLFLGVSTVNLQGLLNFEGNQWQIFLISRVPRLISILIAGASLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILMAMLFFPTASMLLKTTIAVIVSFLGTLLFMTILSRLKFKDTIFVPLVGIMFGNIISSITAFIAYKEDL
LQNLSGWLQGDFSLVMSGRYELLYFSIPTLIVAYLFAHRFSIVGMGKDFAVNLGLNYNQVLYLGLLIVAVVSSIIIVSVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRSVIYPYEISINAVVGVFGSGIFLFLLLKRYRNG

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492893 INQ00_RS05080 WP_269473878.1 1030108..1031061(+) (ceuB) [Haemophilus parainfluenzae strain M1C160_1]
ATGATTAAGAGACGTTATCTGATTTTTCTGTTGATCGTGCTTTCCTTTGTTTCACTTTTTCTCGGGGTAAGTACAGTTAA
TTTGCAAGGGTTACTGAATTTTGAAGGTAATCAATGGCAGATCTTTTTAATTAGTCGCGTGCCTCGCTTAATCAGTATCT
TGATTGCAGGTGCATCCTTAAGTATTTGTGGTTTAGTGATGCAGCAACTCAGTCGAAACCGATTTGTTTCTCCCACCACG
GCGGGCACCATGGATAGTGCAAGATTAGGGATTTTAATGGCGATGCTGTTTTTCCCAACTGCTTCAATGTTGTTAAAAAC
CACCATTGCGGTGATTGTATCTTTCCTTGGCACATTGTTATTTATGACGATTTTGTCCCGTTTGAAATTCAAGGACACAA
TTTTTGTGCCTTTAGTGGGGATTATGTTCGGTAATATCATCAGTTCAATTACTGCCTTTATCGCTTACAAAGAAGATCTA
TTGCAAAACTTATCCGGGTGGCTACAAGGGGACTTTTCTCTTGTGATGTCAGGCCGTTATGAATTGTTGTATTTCAGTAT
TCCTACACTCATAGTGGCTTATTTATTTGCGCATCGTTTTTCTATTGTCGGGATGGGGAAAGATTTTGCAGTTAATCTAG
GTCTAAATTACAACCAAGTACTTTATCTCGGTCTGCTCATTGTGGCAGTGGTCTCTTCGATTATTATCGTGTCTGTTGGC
GTGATCCCTTTCTTGGGGTTAATTATTCCGAATATCGTCACGCTTTATTTAGGGGATAACTTGAAGAAAGTGTTATCTCA
TACTGCCTTGTTGGGTGCCGTATTTGTTTTATTCTGCGATATTTTAGGTCGAAGTGTGATTTATCCTTATGAGATTTCCA
TTAATGCCGTAGTTGGCGTATTTGGCAGCGGTATCTTCTTGTTTTTATTATTAAAGCGGTATAGAAATGGCTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.663

97.476

0.543