Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   INQ00_RS03020 Genome accession   NZ_CP063110
Coordinates   623844..624512 (+) Length   222 a.a.
NCBI ID   WP_081000858.1    Uniprot ID   -
Organism   Haemophilus parainfluenzae strain M1C160_1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 618844..629512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INQ00_RS02995 (INQ00_03000) - 619872..620690 (+) 819 WP_197547272.1 Cof-type HAD-IIB family hydrolase -
  INQ00_RS03000 (INQ00_03005) crcB 620691..621086 (+) 396 WP_111316089.1 fluoride efflux transporter CrcB -
  INQ00_RS03005 (INQ00_03010) recX 621061..621513 (-) 453 WP_197547273.1 recombination regulator RecX -
  INQ00_RS03010 (INQ00_03015) recA 621583..622638 (-) 1056 WP_014064545.1 recombinase RecA Machinery gene
  INQ00_RS03015 (INQ00_03020) - 622775..623617 (-) 843 WP_049362650.1 patatin-like phospholipase family protein -
  INQ00_RS03020 (INQ00_03025) sxy/tfoX 623844..624512 (+) 669 WP_081000858.1 TfoX/Sxy family DNA transformation protein Regulator

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25524.94 Da        Isoelectric Point: 10.3278

>NTDB_id=492888 INQ00_RS03020 WP_081000858.1 623844..624512(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C160_1]
MKTLIIPNDHISKVCDLLNQLIGDVTSKNLFTGYGLFHKEKDMFAVWANNKVYLRAKDELSIKLKGLGCKPFTTNELNKR
FVLSDYYALTESILKDNVLMRTLIILSITQIRKEKLNSALSKIGRIRDLPNLSVKYERALKKVGIDNVDILRQIGAENAI
VRLKKADIGATEAFYWRLRGALENRNCEFYTEKEKERGLIKLNEILSANGFRRCKRTLKKAE

Nucleotide


Download         Length: 669 bp        

>NTDB_id=492888 INQ00_RS03020 WP_081000858.1 623844..624512(+) (sxy/tfoX) [Haemophilus parainfluenzae strain M1C160_1]
ATGAAAACTCTCATAATCCCAAATGATCATATCAGTAAAGTATGTGATTTGTTAAATCAACTTATCGGAGATGTAACAAG
TAAAAATCTATTTACGGGATATGGCTTGTTTCATAAAGAAAAAGATATGTTTGCTGTTTGGGCTAACAATAAGGTTTACT
TGCGCGCTAAGGATGAGCTTTCGATAAAACTAAAAGGACTTGGATGTAAACCCTTTACAACAAATGAACTCAATAAGCGC
TTTGTATTATCTGATTATTATGCTTTAACTGAAAGCATCTTGAAAGATAATGTCTTAATGAGAACCTTGATCATTCTTTC
AATTACTCAAATAAGGAAGGAAAAACTCAATTCTGCACTCTCTAAGATTGGACGGATTCGTGATTTACCGAATTTATCGG
TTAAGTATGAACGAGCATTAAAGAAAGTTGGTATTGATAATGTCGATATTTTACGACAAATAGGTGCTGAAAATGCAATT
GTTCGTTTGAAGAAAGCGGACATTGGTGCAACAGAAGCTTTTTATTGGCGACTTCGTGGCGCTTTAGAAAATCGTAATTG
TGAGTTTTATACTGAGAAAGAAAAGGAGAGAGGGCTTATTAAACTTAATGAAATACTTTCTGCAAATGGATTTAGGCGCT
GTAAACGAACTTTAAAAAAGGCTGAATAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(125-197)

TfoX N-terminal domain (TfoX_N)

(17-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

60.386

93.243

0.563