Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A0071_RS09370 Genome accession   NZ_CP063091
Coordinates   1883653..1884582 (-) Length   309 a.a.
NCBI ID   WP_027305363.1    Uniprot ID   A0A1W6BXV9
Organism   Campylobacter cuniculorum strain 2010D-8469     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1878653..1889582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0071_RS09350 (A0071_09350) - 1878985..1879449 (-) 465 WP_027305366.1 low molecular weight protein-tyrosine-phosphatase -
  A0071_RS09355 (A0071_09355) - 1879505..1880689 (+) 1185 WP_027305365.1 MFS transporter -
  A0071_RS09360 (A0071_09360) - 1880916..1882055 (-) 1140 WP_027305364.1 hypothetical protein -
  A0071_RS09365 (A0071_09365) - 1882065..1883551 (-) 1487 Protein_1840 MBOAT family O-acyltransferase -
  A0071_RS09370 (A0071_09370) waaF 1883653..1884582 (-) 930 WP_027305363.1 lipopolysaccharide heptosyltransferase II Regulator
  A0071_RS09375 (A0071_09375) - 1885491..1886090 (-) 600 WP_027305362.1 bacteriohemerythrin -
  A0071_RS09380 (A0071_09380) - 1886215..1886883 (+) 669 WP_027305361.1 response regulator transcription factor -
  A0071_RS09385 (A0071_09385) - 1886870..1888102 (+) 1233 WP_027305360.1 sensor histidine kinase -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35593.82 Da        Isoelectric Point: 10.0352

>NTDB_id=492871 A0071_RS09370 WP_027305363.1 1883653..1884582(-) (waaF) [Campylobacter cuniculorum strain 2010D-8469]
MKIFINLPTWLGDSVMASAAIYALKEHFKDAHFVFYGSFVSTELFKNFQNSSILVEDKTQRYSKILKIRGKLGEFDYALS
FRSAFSSKIVLKLIKTKQRFFFDKYKFKNEHQVLKYLYFVENTFDFKASSQDLKLPILPRFTQTKILALNPGAHYGSAKR
WEPSYFAEVAKFFANTHKILIFGAGDEQELCDEIEQILKKSEIRVKNLCNKTSIRSLCKNISMCDILVTNDSGPMHIGAV
YKIKTLAVFGPTLWTQTSPWKNPNAKIVRLGLPCSPCMQKTCPLLHHQCMKDLKPEFVIKEIKKLLEKA

Nucleotide


Download         Length: 930 bp        

>NTDB_id=492871 A0071_RS09370 WP_027305363.1 1883653..1884582(-) (waaF) [Campylobacter cuniculorum strain 2010D-8469]
ATGAAAATTTTTATCAATCTTCCCACTTGGTTAGGCGATAGCGTGATGGCAAGTGCTGCAATTTACGCTTTAAAAGAGCA
TTTTAAAGACGCTCATTTCGTATTTTATGGCTCTTTTGTCAGCACAGAACTTTTTAAGAATTTTCAAAATTCAAGCATTT
TAGTAGAGGATAAAACGCAAAGATATTCTAAAATTTTAAAAATTCGCGGAAAACTTGGAGAATTTGACTATGCTTTGAGT
TTTCGCTCGGCTTTTTCAAGTAAAATTGTTTTAAAACTCATCAAAACCAAACAAAGATTTTTTTTTGATAAATATAAATT
TAAAAATGAACATCAGGTTTTAAAATATCTTTATTTTGTAGAAAATACTTTTGATTTTAAAGCCTCATCGCAAGATTTAA
AACTCCCTATCTTACCGAGATTTACTCAAACTAAAATTTTAGCCTTAAATCCCGGAGCACATTATGGAAGTGCCAAAAGA
TGGGAGCCGAGTTATTTTGCTGAAGTGGCAAAATTTTTTGCAAATACGCATAAGATTTTAATTTTTGGTGCAGGAGATGA
ACAAGAGCTTTGCGATGAAATTGAGCAAATTTTAAAAAAATCAGAGATAAGGGTTAAAAATTTATGCAATAAAACAAGCA
TTCGTTCCCTTTGTAAAAACATTTCAATGTGCGATATTTTGGTGACCAATGATAGCGGTCCTATGCATATTGGTGCGGTT
TATAAAATCAAAACTCTTGCAGTTTTTGGACCCACACTTTGGACCCAAACCTCTCCTTGGAAAAATCCAAATGCTAAAAT
TGTGCGTTTGGGTTTGCCTTGCTCTCCTTGTATGCAAAAAACTTGTCCGCTTTTACATCATCAATGTATGAAAGACTTAA
AACCCGAATTTGTGATTAAAGAAATTAAAAAACTCCTTGAAAAAGCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(108-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BXV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.038

100

0.657