Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   A0071_RS00740 Genome accession   NZ_CP063091
Coordinates   166038..166814 (-) Length   258 a.a.
NCBI ID   WP_027305149.1    Uniprot ID   A0A1W6BY98
Organism   Campylobacter cuniculorum strain 2010D-8469     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 161038..171814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0071_RS00715 (A0071_00715) - 161560..162039 (+) 480 WP_084483655.1 cupin domain-containing protein -
  A0071_RS00720 (A0071_00720) - 162057..162941 (+) 885 WP_232087686.1 aldo/keto reductase -
  A0071_RS00725 (A0071_00725) - 163025..164152 (+) 1128 WP_051521675.1 NAD(P)-dependent alcohol dehydrogenase -
  A0071_RS00730 (A0071_00730) msrA 164335..164844 (+) 510 WP_084483656.1 peptide-methionine (S)-S-oxide reductase MsrA -
  A0071_RS00735 (A0071_00735) ruvX 165658..166041 (-) 384 WP_027305150.1 Holliday junction resolvase RuvX -
  A0071_RS00740 (A0071_00740) dprA 166038..166814 (-) 777 WP_027305149.1 DNA-processing protein DprA Machinery gene
  A0071_RS00745 (A0071_00745) - 166804..167961 (-) 1158 WP_027305148.1 divergent polysaccharide deacetylase family protein -
  A0071_RS00750 (A0071_00750) ilvC 167963..168985 (-) 1023 WP_027305147.1 ketol-acid reductoisomerase -
  A0071_RS00755 (A0071_00755) - 169099..171024 (+) 1926 WP_027305146.1 RNB domain-containing ribonuclease -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 29262.15 Da        Isoelectric Point: 9.5293

>NTDB_id=492853 A0071_RS00740 WP_027305149.1 166038..166814(-) (dprA) [Campylobacter cuniculorum strain 2010D-8469]
MENKSVPKDFLHLFKNLNTSPKKLYYKGNLELLNRRKIAIIGSRKMSVYTRNCVLELASLCKRAEICVVSGGALGVDITA
NKAAMPLSIGIFANGLGRIYPKSNERIIKELYTNALALSEQEWDYTPKRYDFLLRNRLIIALSEAVVIAQADFQSGSMQS
ARLALKMQKPLYVLPQRLGESEGTNWLLKENKAKLITDFKEFVLNFGEIKEQNQDEFLEFCAKGVSLEQALKHFGEKVYE
YELEGKIAINGVFIRVLV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=492853 A0071_RS00740 WP_027305149.1 166038..166814(-) (dprA) [Campylobacter cuniculorum strain 2010D-8469]
ATGGAGAATAAAAGCGTTCCTAAGGATTTTTTGCATCTTTTTAAAAATTTAAATACAAGCCCTAAAAAGCTTTATTACAA
AGGAAATTTGGAGCTTTTAAATCGAAGAAAAATTGCAATCATAGGCTCAAGAAAAATGAGCGTCTATACTAGAAATTGTG
TTTTAGAACTTGCAAGTTTGTGCAAAAGGGCTGAAATTTGTGTTGTCAGTGGGGGAGCTTTGGGTGTGGATATTACCGCA
AATAAAGCTGCTATGCCCTTGAGTATAGGAATTTTTGCAAACGGCTTAGGACGCATTTATCCTAAAAGCAATGAAAGAAT
CATCAAAGAACTCTATACAAATGCTTTGGCTTTAAGTGAGCAAGAATGGGATTATACCCCTAAAAGATACGATTTTTTGC
TTAGAAATCGCTTGATTATCGCGTTGAGTGAAGCAGTGGTTATCGCACAGGCGGATTTTCAAAGCGGTTCTATGCAAAGT
GCAAGACTTGCTTTAAAAATGCAAAAACCTCTCTATGTCTTACCTCAAAGATTAGGAGAAAGTGAGGGAACAAATTGGCT
TTTAAAAGAAAATAAAGCGAAATTAATCACTGATTTTAAAGAATTTGTTTTAAATTTTGGAGAAATTAAAGAGCAAAACC
AAGATGAATTCTTAGAATTTTGTGCTAAAGGAGTGAGTTTGGAACAGGCTTTAAAACATTTTGGAGAAAAGGTTTATGAA
TATGAACTTGAAGGAAAAATCGCTATCAATGGCGTTTTTATAAGGGTTTTAGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(11-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1W6BY98

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

71.984

99.612

0.717
  dprA Helicobacter pylori 26695

47.984

96.124

0.461