Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   A0083_RS06395 Genome accession   NZ_CP063089
Coordinates   1273317..1274231 (-) Length   304 a.a.
NCBI ID   WP_197552884.1    Uniprot ID   -
Organism   Campylobacter sp. 2014D-0216     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1268317..1279231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A0083_RS06370 (A0083_06370) mgtE 1268660..1269997 (+) 1338 WP_197552880.1 magnesium transporter -
  A0083_RS06375 (A0083_06375) tpx 1270011..1270529 (+) 519 WP_120759891.1 thiol peroxidase -
  A0083_RS06380 (A0083_06380) - 1270526..1271911 (-) 1386 WP_120759893.1 replicative DNA helicase -
  A0083_RS06385 (A0083_06385) cysK 1271924..1272826 (-) 903 WP_197552882.1 cysteine synthase A -
  A0083_RS06390 (A0083_06390) - 1272923..1273225 (-) 303 WP_039619003.1 HU family DNA-binding protein -
  A0083_RS06395 (A0083_06395) waaF 1273317..1274231 (-) 915 WP_197552884.1 glycosyltransferase family 9 protein Regulator
  A0083_RS06400 (A0083_06400) - 1274283..1275089 (+) 807 WP_197552886.1 glycosyltransferase family 2 protein -
  A0083_RS06405 (A0083_06405) - 1275094..1276902 (-) 1809 WP_232087555.1 motility associated factor glycosyltransferase family protein -
  A0083_RS08160 - 1276886..1277026 (-) 141 WP_232087556.1 hypothetical protein -
  A0083_RS06410 (A0083_06410) - 1277026..1277790 (-) 765 WP_197552888.1 oxidoreductase -
  A0083_RS06415 (A0083_06415) - 1277790..1278497 (-) 708 WP_197552890.1 flagellar modification protein B -

Sequence

Protein


Download         Length: 304 a.a.        Molecular weight: 34492.69 Da        Isoelectric Point: 10.3646

>NTDB_id=492847 A0083_RS06395 WP_197552884.1 1273317..1274231(-) (waaF) [Campylobacter sp. 2014D-0216]
MNIFINLPTWLGDAVMASAAIYAIKEKYPQAKFTFYGSFVSTELFKRFENAQILVENKKQRYRQILKARKNLGKFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNILKEEHQVLKYLNFIEKALNFKATSSVLKLPIKAKSTQKILGINAGAHFGSAKRW
EASYFARVAKEFSPTHQILIFGVESEREICNEIEHLLSKAGIKAKNLCGKTSIYTLCKNISMLDLLITNDSGPMHIGAVY
GVKTVAVFGSTKFSQTSPWQENAKIAHLDLACMPCMQKVCPLKHHKCMKDLKPEVVINLAKAFF

Nucleotide


Download         Length: 915 bp        

>NTDB_id=492847 A0083_RS06395 WP_197552884.1 1273317..1274231(-) (waaF) [Campylobacter sp. 2014D-0216]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGTGATGCGGTAATGGCTAGTGCAGCTATTTATGCTATCAAGGAAAA
GTATCCTCAAGCTAAATTTACTTTTTATGGTTCTTTTGTCAGCACAGAGCTTTTTAAGCGTTTTGAAAATGCTCAAATTT
TAGTAGAAAATAAAAAGCAAAGATATAGACAAATTTTAAAAGCTAGAAAAAACCTTGGTAAATTTGATCTAGCTTTTTCA
TTTCGCTCAGCATTTTCAAGCAAGATTATTTTAAATCTAATCAAAGCAAAAAAAAGATTTTATTTTGATAAAAATATCCT
AAAAGAAGAACACCAAGTTTTAAAGTACTTAAATTTCATAGAAAAAGCTTTAAATTTTAAAGCCACTTCAAGTGTTTTAA
AACTTCCTATCAAAGCAAAGTCAACTCAAAAAATTTTAGGTATAAATGCAGGTGCACATTTTGGAAGTGCTAAAAGATGG
GAGGCAAGCTATTTTGCAAGGGTGGCAAAAGAATTTAGCCCCACACATCAAATTTTAATCTTTGGAGTAGAAAGTGAGAG
AGAAATTTGCAATGAAATTGAACATTTGCTTTCAAAAGCAGGTATAAAGGCAAAAAATCTTTGTGGCAAAACTAGCATTT
ATACTTTATGTAAAAACATTTCTATGCTTGATTTGCTCATCACAAATGATAGTGGTCCTATGCATATAGGCGCAGTTTAT
GGGGTGAAAACGGTGGCTGTTTTTGGCTCAACTAAATTTAGCCAAACCTCGCCTTGGCAAGAAAACGCTAAAATAGCTCA
TCTTGATCTAGCTTGTATGCCTTGTATGCAAAAAGTTTGTCCTTTAAAACATCACAAATGCATGAAAGACTTAAAACCTG
AGGTGGTAATAAATTTAGCAAAAGCATTTTTTTAG

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.916

100

0.674