Detailed information NTG0492838

Bioinformatically predicted

Overview

• Name: ctsD
• Type: Machinery gene
• Locus tag: A0083_RS02080
• Genome accession: NZ_CP063089
• Coordinates: 398747..400138 (+)
• Length: 463 a.a.
• NCBI ID: WP_120759634.1
• Uniprot ID: -
• Organism: Campylobacter sp. 2014D-0216
• Function: type II secretion system/type IV pilin; DNA uptake (predicted from homology) DNA binding and uptake

Genomic Context

Location: 393747..405138

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A0083_RS02065 (A0083_02065)	-	394130..394774 (+)	645	WP_039662966.1	HAD family hydrolase	-
A0083_RS02070 (A0083_02070)	nifJ	394892..398446 (+)	3555	WP_197553850.1	pyruvate:ferredoxin (flavodoxin) oxidoreductase	-
A0083_RS02075 (A0083_02075)	-	398464..398775 (+)	312	WP_197553853.1	hypothetical protein	-
A0083_RS02080 (A0083_02080)	ctsD	398747..400138 (+)	1392	WP_120759634.1	pilus (MSHA type) biogenesis protein MshL	Machinery gene
A0083_RS02085 (A0083_02085)	-	400119..400445 (+)	327	WP_120759632.1	CDC27 family protein	-
A0083_RS02090 (A0083_02090)	-	400442..401965 (+)	1524	WP_197553855.1	GspE/PulE family protein	-
A0083_RS02095 (A0083_02095)	-	401962..403122 (+)	1161	WP_197553856.1	type II secretion system F family protein	-
A0083_RS02100 (A0083_02100)	-	403119..403871 (-)	753	WP_197553859.1	TSUP family transporter	-
A0083_RS02105 (A0083_02105)	-	403856..404605 (-)	750	WP_197553861.1	TIGR02757 family protein	-

Sequence

Protein

• Length: 463 a.a.
• Molecular weight: 52624.18 Da
• Isoelectric Point: 6.6705

>NTDB_id=492838 A0083_RS02080 WP_120759634.1 398747..400138(+) (ctsD) [Campylobacter sp. 2014D-0216]
MKKIIFLFISFLIYTDVLASECKQRFFDISVESKTSLLEILNELGRECGFSLIIKDELARGKLLHDQNYLHIRKLSLREI
FKLLLEENNLAYEYTKNVLKIYGRQVKTFKIHYISSIREGQSITKASVDSRPRQGDYDNAKEADNLVISTDRFDFWEKIS
EEIQSLLDENSTRPIINTNAGIITLNATPYELERVEKYLSDLNKRLKKQVLIDVSIVAVHLNHSHSSGINWQELAFRLNG
DEDDFIINKGGVRNINLKSNIETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVDDGQTLILGGLISKN
TISNHNEVSALSKIPIFGALFQGKQNLEDTSEIVFIIKPSLIKADKKILSLKDLGFTHEDDMF

Nucleotide

• Length: 1392 bp

>NTDB_id=492838 A0083_RS02080 WP_120759634.1 398747..400138(+) (ctsD) [Campylobacter sp. 2014D-0216]
ATGAAAAAAATAATATTTTTATTTATTAGCTTTTTAATTTATACAGATGTTTTAGCAAGTGAATGTAAACAGCGATTTTT
TGATATTAGCGTTGAAAGTAAAACTTCTTTACTTGAAATTTTAAATGAATTAGGTAGAGAATGTGGTTTTAGTCTTATTA
TTAAAGATGAGCTTGCTAGGGGAAAATTACTTCATGATCAAAACTATTTACATATTAGAAAACTCTCTTTAAGAGAAATT
TTTAAACTTCTACTAGAAGAAAATAATCTTGCGTATGAATACACTAAAAATGTTCTAAAAATTTATGGAAGACAAGTAAA
AACTTTTAAAATTCATTATATTAGCTCCATTCGCGAGGGGCAAAGCATCACCAAGGCTTCAGTGGATTCAAGGCCTAGAC
AAGGAGATTATGATAATGCAAAAGAGGCGGATAATTTAGTCATTAGTACTGATAGGTTTGATTTTTGGGAAAAAATTTCA
GAAGAAATTCAAAGTTTACTTGATGAAAATTCAACCCGACCCATCATCAACACTAATGCAGGAATTATTACTTTAAATGC
TACGCCATATGAGCTTGAAAGGGTTGAAAAATATCTTAGTGATTTAAACAAAAGGCTTAAAAAGCAAGTTTTAATTGATG
TGAGTATAGTTGCAGTGCATTTAAATCACTCTCATTCAAGTGGGATTAATTGGCAAGAGCTGGCCTTTAGACTAAATGGT
GATGAGGATGACTTTATAATCAATAAAGGCGGTGTAAGAAATATTAATCTAAAATCAAATATTGAAACTAAAGCTATTTT
AAATTTATTACAAGAAAATGGTAAAACTACTGTGCTTTCTAATCCAAAACTTATGGCGCTTAATAATCAGCAAGCTATTA
TTTCTATAGGAGATACGATTAATTATCAAGTAAAAGAAAGTTCCAAAGGGACTGAAAATGGCACAACTATTAGTGAAACT
TATAATAATTATTCTATTTTTGTCGGCATTTTACTTAATATTTTACCAGAAATTTCAGATGATCATAAAATTATGCTTAG
GATTAACCCAAGTTTGAGTGATTTTAAATATAGCGTTGATAATCATCGTCAAAATAAGCCAAGAAATATTGCGCCTGATA
CTATACAAAAAAAGCTTTCAACCGTTGTTGAAGTTGATGATGGGCAAACTTTGATTTTGGGCGGATTAATTAGTAAAAAT
ACCATTAGTAATCATAACGAAGTAAGCGCTTTGTCTAAAATTCCAATTTTTGGTGCTTTGTTTCAAGGAAAACAAAATTT
AGAAGATACCAGTGAAATAGTGTTTATTATCAAACCAAGTTTGATAAAAGCAGATAAAAAAATACTTAGCTTGAAAGATT
TGGGATTTACGCATGAAGATGATATGTTTTAG

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (269-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ctsD	Campylobacter jejuni subsp. jejuni 81-176	56.448	100	0.577