Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   HW260_RS04410 Genome accession   NZ_CP063081
Coordinates   829129..830970 (-) Length   613 a.a.
NCBI ID   WP_197557843.1    Uniprot ID   -
Organism   Helicobacter cinaedi strain D7095     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 824129..835970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HW260_RS04395 (HW260_04385) - 825447..826136 (-) 690 WP_002956820.1 response regulator -
  HW260_RS04400 (HW260_04390) - 826139..827641 (-) 1503 WP_002956819.1 sensor histidine kinase -
  HW260_RS04405 (HW260_04395) - 827651..829132 (-) 1482 WP_014666647.1 hypothetical protein -
  HW260_RS04410 (HW260_04400) uvrC 829129..830970 (-) 1842 WP_197557843.1 excinuclease ABC subunit UvrC Machinery gene
  HW260_RS04415 (HW260_04405) - 831014..831472 (-) 459 WP_231900552.1 hypothetical protein -
  HW260_RS04420 (HW260_04410) - 831464..831712 (+) 249 WP_002956815.1 hypothetical protein -
  HW260_RS04425 (HW260_04415) nadB 831713..833158 (+) 1446 WP_104716683.1 L-aspartate oxidase -
  HW260_RS04430 (HW260_04420) rmuC 833173..834516 (-) 1344 WP_002956812.1 DNA recombination protein RmuC -
  HW260_RS04435 (HW260_04425) moaC 834526..835002 (-) 477 WP_002956810.1 cyclic pyranopterin monophosphate synthase MoaC -
  HW260_RS04440 (HW260_04430) mog 835024..835554 (-) 531 WP_014666653.1 molybdopterin adenylyltransferase -

Sequence

Protein


Download         Length: 613 a.a.        Molecular weight: 70722.24 Da        Isoelectric Point: 9.7330

>NTDB_id=492808 HW260_RS04410 WP_197557843.1 829129..830970(-) (uvrC) [Helicobacter cinaedi strain D7095]
MYSLLFTLQNLPTQPGIYQYFDKDDNLLYVGKAKNLKNRIKSYFSIHNDIITPKANLSQRIALMVSQVAKIHTLLTQSQE
DALILENSLIKSLKPKYNVLLRDDKTYPYIYIDTSATFPRFEITRKVLQSKHIEYFGPFVSGARELLDSLYDALPLVQKK
SCLKGKKACIFHQIHKCPAPCENKISQSQYAEYITQAKAFIDDRKGLIEILESKMQILSHNLQFEEAAKIRDRIQKLKTL
KTQSIIDIMSGDYDIFLLDSAGQNHILMMLFIRNGRIVSSDFSFIHQEIHSQNLAQLYTQALLNHYKTPLPLPPKEILIP
HFDFQDKDEKDDLQKILQAQTQSHLKITQPQKGTKYNLLQLAKKNAQEILTLHTKEQKNAQNENTTLYALKDLCNLSQVP
YRIEIFDTSHHSGSHNVGGMVVYENGEFIRSAYRRFELHSSDEYSQMSEMLTRRAKKFESNPPPDLWLLDGGKAQINLAL
DILKSVGANVDIIAIAKMKYNAKAYRAKGNALDILRTQNAEFKLSTNDKRLQFCQKLRDEVHRYAITYHRNKKQKDIHKI
QIQKGSDMDSSYSKAQIKQLLDYFGSFHAFQNAPKEQIENALSRSFKSNKDSK

Nucleotide


Download         Length: 1842 bp        

>NTDB_id=492808 HW260_RS04410 WP_197557843.1 829129..830970(-) (uvrC) [Helicobacter cinaedi strain D7095]
ATATATAGTCTGCTTTTTACCCTGCAAAATCTCCCTACACAGCCCGGAATCTACCAATATTTTGATAAAGATGATAACTT
GCTCTATGTCGGCAAGGCTAAAAATCTAAAAAATCGCATAAAAAGCTATTTTTCTATCCATAATGACATCATCACGCCAA
AGGCTAACCTTAGCCAAAGAATAGCCCTTATGGTATCCCAAGTGGCTAAGATTCACACTTTACTTACACAAAGCCAAGAA
GATGCCCTTATCCTTGAAAACTCCCTTATCAAAAGCCTAAAGCCAAAGTATAATGTTCTTTTGCGTGATGATAAAACTTA
TCCTTATATTTATATTGATACTTCTGCTACTTTTCCACGATTTGAAATCACTCGCAAGGTGCTACAAAGTAAGCATATTG
AGTATTTTGGTCCTTTTGTGAGTGGAGCTAGAGAGCTGCTTGATAGTCTCTATGATGCCCTGCCCCTTGTGCAGAAAAAA
TCCTGCCTTAAAGGCAAAAAGGCGTGTATATTTCATCAGATTCATAAATGCCCTGCCCCTTGTGAAAATAAAATCTCTCA
AAGTCAATATGCAGAGTATATTACACAAGCAAAGGCGTTTATAGATGATAGAAAAGGACTTATAGAGATTTTAGAATCTA
AAATGCAGATACTCTCACACAATCTACAATTTGAAGAGGCAGCAAAGATACGAGATAGAATCCAAAAGCTAAAAACACTA
AAAACCCAATCTATTATTGATATTATGAGCGGAGATTATGATATTTTCCTGCTTGATTCAGCAGGGCAAAATCATATCCT
TATGATGCTTTTTATCCGCAATGGACGCATTGTCTCAAGTGATTTTTCATTTATCCACCAAGAGATTCACAGCCAAAACC
TAGCCCAACTCTACACCCAAGCCTTACTTAATCACTATAAAACCCCTCTTCCCTTGCCACCAAAGGAGATTCTTATCCCG
CATTTTGACTTCCAAGACAAAGATGAAAAAGATGATTTACAAAAGATTTTGCAAGCCCAAACACAAAGTCATCTCAAAAT
CACCCAACCACAAAAAGGTACAAAATATAACCTTTTGCAACTTGCTAAAAAGAACGCCCAAGAAATCCTAACTTTGCATA
CCAAAGAGCAAAAGAACGCCCAAAATGAAAACACCACTTTATACGCTCTAAAAGATTTATGCAATCTCTCTCAAGTGCCT
TATAGGATAGAGATCTTTGACACCTCTCATCATAGCGGAAGCCACAATGTAGGCGGAATGGTAGTGTATGAAAATGGCGA
GTTTATCCGCAGTGCTTACAGACGCTTTGAGCTTCATAGCAGTGATGAATACTCTCAAATGAGTGAAATGCTAACACGCA
GGGCAAAAAAATTTGAATCCAATCCGCCACCAGATTTATGGCTACTTGATGGGGGCAAGGCTCAAATCAACCTAGCACTT
GACATTCTAAAAAGTGTGGGGGCAAATGTAGATATTATCGCCATTGCCAAAATGAAATATAATGCCAAAGCCTATCGCGC
TAAAGGCAATGCCCTTGATATTTTACGCACACAAAATGCGGAGTTTAAACTTAGCACAAACGATAAAAGACTACAATTCT
GCCAAAAGCTCCGCGATGAAGTGCATAGATATGCTATCACTTATCATCGCAACAAAAAGCAAAAAGACATACACAAGATT
CAGATTCAAAAAGGAAGTGATATGGATAGCTCTTATAGCAAGGCTCAAATTAAACAACTTTTAGATTATTTTGGCTCATT
CCACGCCTTTCAAAACGCTCCAAAAGAACAGATAGAAAATGCTCTTTCACGCTCTTTTAAAAGTAATAAAGATTCAAAAT
GA

Domains

Predicted by InterproScan.

UvrB/uvrC motif (UVR)

(207-239)

GIY-YIG catalytic domain (GIY-YIG)

(15-98)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(392-546)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

50.746

98.369

0.499