Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   IMC75_RS06190 Genome accession   NZ_CP063079
Coordinates   1244310..1246103 (-) Length   597 a.a.
NCBI ID   WP_044598563.1    Uniprot ID   -
Organism   Campylobacter peloridis strain 2016D-0074     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1239310..1251103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMC75_RS06165 (IMC75_06165) - 1239816..1240598 (+) 783 WP_044598558.1 shikimate dehydrogenase -
  IMC75_RS06170 (IMC75_06170) dnaJ 1240595..1241713 (-) 1119 WP_044598559.1 molecular chaperone DnaJ -
  IMC75_RS06175 (IMC75_06175) - 1241834..1242505 (+) 672 WP_039617824.1 response regulator transcription factor -
  IMC75_RS06180 (IMC75_06180) - 1242502..1243737 (+) 1236 WP_044598561.1 ArsS family sensor histidine kinase -
  IMC75_RS06185 (IMC75_06185) recR 1243734..1244303 (+) 570 WP_044598562.1 recombination mediator RecR -
  IMC75_RS06190 (IMC75_06190) uvrC 1244310..1246103 (-) 1794 WP_044598563.1 excinuclease ABC subunit UvrC Machinery gene
  IMC75_RS06195 (IMC75_06195) - 1246090..1246542 (-) 453 WP_044598564.1 hypothetical protein -
  IMC75_RS06200 (IMC75_06200) - 1246525..1246680 (+) 156 WP_197556443.1 hypothetical protein -
  IMC75_RS06205 (IMC75_06205) nhaD 1246677..1248035 (+) 1359 WP_044598566.1 sodium:proton antiporter NhaD -
  IMC75_RS06210 (IMC75_06210) guaA 1248045..1249580 (+) 1536 WP_044598567.1 glutamine-hydrolyzing GMP synthase -
  IMC75_RS06215 (IMC75_06215) - 1249581..1250132 (-) 552 WP_044598568.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 597 a.a.        Molecular weight: 69658.60 Da        Isoelectric Point: 9.7969

>NTDB_id=492802 IMC75_RS06190 WP_044598563.1 1244310..1246103(-) (uvrC) [Campylobacter peloridis strain 2016D-0074]
MLENELKNLPNLPGIYQYFDEHGKLLYIGKAKNLKNRIRSYFSFTPKLCPNSKNSLRIQKMISQTHHVEFITTKNEADAL
ILENSFIKQLHPKYNILLRDDKTYPYIYIDLNEEYPRFEITRKIIKKNKIKYFGPFFKGAKELLNALYLTFKLKQKKSCK
KSCLFYQIQRCTAPCEGKISQVEYSKIVHKAIQALLNPSYLIKNLEQKMLDYAKNENFEEAATIRDQIQTIQDISVKIRI
DLAKLENFDVFAICIEQNILSMVRFVINSGKVISSNHKVLVLKEESECGFNEIYKQYILENYTQESPVNSTHIYIHKEFE
DMKILEDLLSQRFNKKFTIKVPKIGEKKEICQLAIQNAQINIQKYLKNENYLFLSEFQKYFNLQNFPNHIEIFDNSHLQG
EANVGALVSYKNDKFDKNSYRHYHLTHKNDYEQMQQTLTKRALSFDKNPPPDLWIIDGGYALLKLANDIIKSSGANIDII
AISKEKIDAKAHRAKGSAKDKIHTINGVITLSPSDKKLQFIQKLRDEAHRFAISFHQKTKRNQNLKNSRLIKLGISQGNI
KKLLDYYGSFDNITNADFDELKIICNAKIAKLIKENL

Nucleotide


Download         Length: 1794 bp        

>NTDB_id=492802 IMC75_RS06190 WP_044598563.1 1244310..1246103(-) (uvrC) [Campylobacter peloridis strain 2016D-0074]
ATGCTAGAAAATGAACTTAAAAATCTACCAAATTTACCAGGAATTTATCAGTATTTTGATGAGCATGGAAAATTATTATA
CATAGGAAAAGCTAAAAACTTAAAAAATCGCATTCGAAGTTATTTCAGCTTTACACCAAAACTTTGCCCAAATTCCAAAA
ATAGTCTTAGAATTCAAAAAATGATTAGCCAAACTCATCATGTAGAATTTATTACAACTAAAAATGAAGCTGATGCCCTA
ATTTTAGAAAATTCTTTTATAAAACAACTGCATCCTAAATATAATATTTTATTAAGAGATGATAAAACTTATCCTTATAT
ATACATTGACTTAAACGAAGAATACCCAAGGTTTGAAATAACAAGAAAAATCATTAAAAAAAATAAAATAAAATATTTTG
GGCCTTTTTTTAAAGGTGCAAAAGAGCTTTTAAATGCCTTATATTTAACATTCAAGCTAAAACAAAAAAAATCTTGCAAG
AAATCATGTTTATTTTACCAAATACAAAGATGCACAGCACCTTGTGAAGGAAAAATATCCCAAGTAGAATATAGTAAAAT
TGTTCATAAAGCCATACAAGCACTTTTAAATCCATCTTATTTAATAAAAAATTTAGAACAAAAAATGCTTGATTATGCTA
AAAATGAAAATTTTGAAGAAGCTGCAACAATAAGAGATCAAATTCAAACAATTCAAGACATCAGTGTTAAAATACGAATT
GACCTAGCAAAACTTGAAAATTTTGATGTTTTTGCTATATGTATAGAGCAAAATATACTCTCCATGGTGCGTTTTGTTAT
AAATAGTGGAAAGGTTATTAGTTCTAATCATAAAGTCTTAGTATTAAAAGAAGAAAGTGAGTGTGGTTTTAATGAAATTT
ATAAACAATATATTTTAGAAAACTATACACAAGAAAGTCCTGTAAATTCTACACATATTTATATACATAAAGAATTTGAA
GATATGAAAATACTAGAAGATTTATTAAGTCAAAGATTCAATAAAAAATTTACTATTAAAGTTCCTAAGATAGGTGAAAA
AAAAGAAATTTGCCAATTAGCTATACAAAATGCACAAATTAACATTCAAAAATACCTAAAAAACGAAAATTACTTATTTT
TAAGCGAATTTCAAAAATACTTTAATTTACAAAATTTCCCAAATCATATAGAAATTTTTGATAATTCTCATTTACAAGGA
GAAGCAAATGTAGGGGCTTTAGTTTCTTATAAAAATGATAAATTTGATAAAAACTCTTATAGACATTATCATTTAACACA
TAAAAATGATTATGAGCAAATGCAACAAACCCTTACTAAAAGAGCTTTATCATTTGATAAAAATCCGCCTCCTGATTTAT
GGATTATTGATGGTGGCTATGCTTTATTAAAACTAGCAAATGATATCATTAAAAGTTCTGGTGCTAATATAGATATAATA
GCCATATCCAAAGAAAAAATAGACGCCAAAGCACATAGAGCAAAAGGAAGTGCCAAGGATAAAATACACACTATTAATGG
GGTAATTACCTTATCTCCTAGTGATAAAAAATTACAATTTATACAAAAACTACGCGATGAGGCACATCGCTTTGCAATAA
GCTTCCATCAAAAAACAAAAAGAAACCAAAATTTGAAAAATTCAAGACTCATTAAACTTGGAATTTCTCAAGGTAATATC
AAAAAACTTTTAGATTACTATGGCAGTTTTGATAATATAACTAATGCAGATTTTGATGAATTAAAAATAATTTGTAATGC
AAAAATTGCAAAATTAATCAAAGAAAATTTGTAG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(13-95)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(378-533)

UvrB/uvrC motif (UVR)

(201-233)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

48.667

100

0.489