Detailed information    

insolico Bioinformatically predicted

Overview

Name   ctsD   Type   Machinery gene
Locus tag   IMC75_RS05190 Genome accession   NZ_CP063079
Coordinates   1043214..1044605 (+) Length   463 a.a.
NCBI ID   WP_044598406.1    Uniprot ID   -
Organism   Campylobacter peloridis strain 2016D-0074     
Function   type II secretion system/type IV pilin; DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038214..1049605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMC75_RS05175 (IMC75_05175) - 1038598..1039242 (+) 645 WP_044598403.1 HAD family hydrolase -
  IMC75_RS05180 (IMC75_05180) nifJ 1039358..1042912 (+) 3555 WP_044598404.1 pyruvate:ferredoxin (flavodoxin) oxidoreductase -
  IMC75_RS05185 (IMC75_05185) - 1042943..1043245 (+) 303 WP_148308764.1 hypothetical protein -
  IMC75_RS05190 (IMC75_05190) ctsD 1043214..1044605 (+) 1392 WP_044598406.1 pilus (MSHA type) biogenesis protein MshL Machinery gene
  IMC75_RS05195 (IMC75_05195) - 1044586..1044924 (+) 339 WP_049984562.1 transformation system, membrane protein CtsX -
  IMC75_RS05200 (IMC75_05200) - 1044908..1046470 (+) 1563 WP_044598407.1 transformation system, type II secretion system ATPase CtsE -
  IMC75_RS05205 (IMC75_05205) - 1046491..1047627 (+) 1137 WP_197556440.1 type II secretion system F family protein -
  IMC75_RS05210 (IMC75_05210) - 1047624..1048376 (-) 753 WP_044598409.1 TSUP family transporter -
  IMC75_RS05215 (IMC75_05215) - 1048361..1049110 (-) 750 WP_044598410.1 TIGR02757 family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52420.41 Da        Isoelectric Point: 8.2135

>NTDB_id=492800 IMC75_RS05190 WP_044598406.1 1043214..1044605(+) (ctsD) [Campylobacter peloridis strain 2016D-0074]
MKKIIILLFISVCFANGALKCSQRTFDISVETKSSLLEVLNELGRECRFSIIIKDDLAKNKLNNQQNYIHISKMTLREIF
DLLLKENNLAYEYEKNVLKIYGKLVKTFKVHYISSIREGQSITKASVDSRPRQGDLDIFGKDADNLVVSTDKFNFWEKIA
EEIQALLDDDSTKPIINTNAGIITLNATPYEITRVQNYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQELAFKLNA
DDKEFILNKGGIKNINLKSNIEIKAILNLLQENGKTSVLSNPKLMALNNQQAIISIGDTINYQVKESSKGTENGTTISET
YNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPRNIAPDTIQKKLSTVVEVEDGQTLILGGLISKN
SVNNQNEISALSKIPLFGLLFQGKQNIEDVSEIVFIIKPVIVKEDKKILNLKELGFDHEDYMF

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=492800 IMC75_RS05190 WP_044598406.1 1043214..1044605(+) (ctsD) [Campylobacter peloridis strain 2016D-0074]
ATGAAAAAAATAATAATATTGTTATTTATTAGCGTATGTTTTGCTAATGGGGCTTTAAAATGCTCTCAAAGAACATTTGA
TATAAGTGTTGAAACAAAAAGTTCTTTGCTTGAGGTTTTAAATGAATTAGGTAGAGAGTGTAGATTTAGTATTATCATTA
AAGATGATTTAGCTAAAAATAAACTAAACAACCAACAAAATTATATTCATATTAGTAAAATGACTCTAAGAGAAATTTTT
GATCTTTTGCTAAAGGAGAATAATCTTGCTTATGAATATGAAAAGAATGTTTTAAAAATTTATGGTAAATTAGTTAAAAC
TTTTAAAGTCCATTACATAAGTTCTATAAGAGAAGGTCAAAGCATTACTAAAGCTTCTGTTGATTCTAGGCCAAGACAAG
GGGATTTAGATATTTTTGGAAAGGATGCAGATAATTTAGTTGTTAGCACAGATAAATTTAATTTTTGGGAAAAAATTGCA
GAAGAAATACAAGCTTTGTTAGATGATGATTCTACTAAACCTATTATCAATACTAATGCAGGTATTATAACCTTAAATGC
AACTCCTTATGAAATAACTAGGGTGCAAAATTATTTAAAAGATTTAAACAAAAGACTAAAAAAGCAAGTGTTAATCGATG
TAAGTATAGTTGCAGTTCACTTAAATAAAAGTCATTCTAGTGGGATTAATTGGCAAGAGCTTGCTTTTAAGTTAAATGCA
GATGATAAAGAATTCATACTTAATAAAGGTGGAATTAAAAATATTAATTTAAAATCAAATATAGAAATCAAAGCAATTTT
AAATTTATTACAAGAAAATGGAAAAACTTCAGTTCTTTCTAATCCAAAGCTAATGGCTTTAAATAATCAACAAGCTATAA
TTTCTATTGGTGATACTATTAATTATCAAGTTAAAGAAAGCTCCAAAGGAACAGAAAATGGAACAACTATAAGTGAAACT
TATAATAATTACTCAATATTTGTAGGTATTTTACTAAATATCTTGCCAGAAATTTCAGATGATCATAAAATTATGCTTAG
GATAAATCCAAGTTTAAGTGATTTTAAATATAGTGTAGATAATCACCGCCAAAACAAACCAAGAAATATAGCCCCTGATA
CTATACAAAAAAAATTATCCACTGTTGTTGAAGTGGAAGATGGACAGACTTTGATTTTAGGCGGATTAATCAGTAAAAAT
AGCGTCAATAATCAAAATGAAATTAGTGCTCTTTCGAAAATTCCTTTATTTGGCTTGTTATTTCAAGGAAAGCAAAATAT
AGAAGATGTGAGTGAAATAGTATTCATTATAAAACCAGTGATTGTAAAAGAAGATAAAAAGATATTAAATTTAAAAGAAT
TAGGATTTGATCATGAAGATTATATGTTTTAG

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(49-101)

Bacterial type II and III secretion system protein (Secretin)

(269-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ctsD Campylobacter jejuni subsp. jejuni 81-176

57.725

100

0.581