Detailed information    

insolico Bioinformatically predicted

Overview

Name   waaF   Type   Regulator
Locus tag   IMC75_RS01505 Genome accession   NZ_CP063079
Coordinates   306799..307719 (-) Length   306 a.a.
NCBI ID   WP_044599169.1    Uniprot ID   -
Organism   Campylobacter peloridis strain 2016D-0074     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 300979..342610 306799..307719 within 0


Gene organization within MGE regions


Location: 300979..342610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMC75_RS01475 (IMC75_01475) - 300979..302136 (+) 1158 WP_044599163.1 peptidoglycan DD-metalloendopeptidase family protein -
  IMC75_RS01480 (IMC75_01480) mgtE 302138..303481 (+) 1344 WP_044599164.1 magnesium transporter -
  IMC75_RS01485 (IMC75_01485) tpx 303491..304009 (+) 519 WP_044599165.1 thiol peroxidase -
  IMC75_RS01490 (IMC75_01490) - 304006..305394 (-) 1389 WP_044599166.1 replicative DNA helicase -
  IMC75_RS01495 (IMC75_01495) cysK 305404..306306 (-) 903 WP_044599167.1 cysteine synthase A -
  IMC75_RS01500 (IMC75_01500) - 306408..306710 (-) 303 WP_044599168.1 HU family DNA-binding protein -
  IMC75_RS01505 (IMC75_01505) waaF 306799..307719 (-) 921 WP_044599169.1 lipopolysaccharide heptosyltransferase II Regulator
  IMC75_RS01510 (IMC75_01510) - 307770..308597 (+) 828 WP_044599170.1 glycosyltransferase family 2 protein -
  IMC75_RS01515 (IMC75_01515) - 308578..309442 (+) 865 Protein_305 glycosyltransferase -
  IMC75_RS01520 (IMC75_01520) - 309439..310557 (-) 1119 WP_044599172.1 glycosyltransferase family 4 protein -
  IMC75_RS01525 (IMC75_01525) - 310623..311567 (+) 945 WP_044599173.1 glycosyltransferase family 2 protein -
  IMC75_RS01530 (IMC75_01530) - 311603..311791 (+) 189 WP_044599174.1 hypothetical protein -
  IMC75_RS01535 (IMC75_01535) - 312307..313479 (-) 1173 WP_044599175.1 glycosyltransferase family 2 protein -
  IMC75_RS01540 (IMC75_01540) - 313537..314532 (+) 996 WP_044599176.1 capsular polysaccharide synthesis protein -
  IMC75_RS01545 (IMC75_01545) - 314516..315689 (-) 1174 Protein_311 glycosyltransferase family 2 protein -
  IMC75_RS01550 (IMC75_01550) - 315693..317240 (-) 1548 WP_044599178.1 glycosyltransferase family 2 protein -
  IMC75_RS01555 (IMC75_01555) - 317249..318121 (-) 873 WP_044599179.1 lipid A biosynthesis lauroyl acyltransferase -
  IMC75_RS01560 (IMC75_01560) waaC 318118..319137 (-) 1020 WP_044599180.1 lipopolysaccharide heptosyltransferase I -
  IMC75_RS01565 (IMC75_01565) - 319204..319983 (+) 780 WP_044599181.1 3'-5' exonuclease -
  IMC75_RS01570 (IMC75_01570) galE 320042..321028 (+) 987 WP_044599182.1 UDP-glucose 4-epimerase GalE -
  IMC75_RS01575 (IMC75_01575) - 321022..322722 (+) 1701 WP_044599583.1 flippase -
  IMC75_RS01580 (IMC75_01580) - 322719..323786 (+) 1068 WP_044599183.1 GalNAc alpha1-4 transferase -
  IMC75_RS01585 (IMC75_01585) - 323786..324877 (+) 1092 WP_044599184.1 glycosyltransferase -
  IMC75_RS01590 (IMC75_01590) - 324889..327027 (+) 2139 WP_044599185.1 oligosaccharide transferase -
  IMC75_RS01595 (IMC75_01595) pglA 327024..328151 (+) 1128 WP_044599186.1 N, N'-diacetylbacillosaminyl-diphospho-undecaprenol alpha-1,3-N-acetylgalactosaminyltransferase -
  IMC75_RS01600 (IMC75_01600) pglC 328144..328746 (+) 603 WP_044599187.1 undecaprenyl phosphate N,N'-diacetylbacillosamine 1-phosphate transferase -
  IMC75_RS01605 (IMC75_01605) pglD 328733..329329 (+) 597 WP_044599188.1 UDP-N-acetylbacillosamine N-acetyltransferase -
  IMC75_RS01610 (IMC75_01610) pglE 329326..330486 (+) 1161 WP_044599189.1 UDP-N-acetylbacillosamine transaminase -
  IMC75_RS01615 (IMC75_01615) pglF 330488..332251 (+) 1764 WP_044599190.1 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining) -
  IMC75_RS01620 (IMC75_01620) - 332370..332747 (+) 378 WP_044599191.1 chemotaxis response regulator CheY -
  IMC75_RS01625 (IMC75_01625) - 332762..333598 (+) 837 WP_044599192.1 50S ribosomal protein L11 methyltransferase -
  IMC75_RS01630 (IMC75_01630) ftsH 333598..335517 (+) 1920 WP_044599193.1 ATP-dependent zinc metalloprotease FtsH -
  IMC75_RS01635 (IMC75_01635) - 335517..336134 (+) 618 WP_044599194.1 phosphatidylserine decarboxylase-related protein -
  IMC75_RS01640 (IMC75_01640) pssA 336131..336841 (+) 711 WP_044599195.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -
  IMC75_RS01645 (IMC75_01645) - 336903..337457 (+) 555 WP_044599196.1 membrane protein -
  IMC75_RS01655 (IMC75_01655) - 337636..339105 (+) 1470 WP_044599197.1 DNA methylase -
  IMC75_RS01660 (IMC75_01660) - 339098..339292 (+) 195 WP_044599198.1 hypothetical protein -
  IMC75_RS01665 (IMC75_01665) ciaB 339311..341146 (-) 1836 WP_044599199.1 invasion protein CiaB -
  IMC75_RS01670 (IMC75_01670) - 341211..341615 (+) 405 WP_044599200.1 acyl-CoA thioesterase -
  IMC75_RS01675 (IMC75_01675) - 341681..342610 (+) 930 WP_044599201.1 ribose-phosphate pyrophosphokinase -

Sequence

Protein


Download         Length: 306 a.a.        Molecular weight: 34697.97 Da        Isoelectric Point: 10.3366

>NTDB_id=492792 IMC75_RS01505 WP_044599169.1 306799..307719(-) (waaF) [Campylobacter peloridis strain 2016D-0074]
MNIFINLPTWLGDSVMASAAIYAIKEKYPEAKFMFYGSFVSTELFKRFENAQVLVENKKQRYKQILQARKSLGEFDLAFS
FRSAFSSKIILNLIKAKKRFYFDKNTLKEEHQVLKYLNFIEKALNFKATSNALKLPIKAKSTQKILGINPGAHFGSAKRW
EASYFARVAKEFSSTHKILIFGVKSEREICDSIENLLLKDGIKAKNLCGKTSIFTLCKNISMLDLLITNDSGPMHIGAVY
GVKTIAIFGSTKFSQTSPWQENATIAHLNLACMPCMQKICPLKHHKCMKDLKPAMVINLAKELQKI

Nucleotide


Download         Length: 921 bp        

>NTDB_id=492792 IMC75_RS01505 WP_044599169.1 306799..307719(-) (waaF) [Campylobacter peloridis strain 2016D-0074]
ATGAATATTTTTATCAACCTTCCTACTTGGCTTGGAGATAGCGTTATGGCTAGTGCGGCTATTTATGCTATAAAAGAAAA
ATACCCCGAAGCTAAATTTATGTTTTATGGTTCTTTTGTAAGCACAGAGCTTTTTAAACGCTTTGAAAACGCCCAAGTTT
TAGTGGAAAATAAAAAACAAAGATACAAGCAAATTTTGCAAGCTAGAAAAAGCCTTGGTGAATTTGATTTAGCTTTTTCG
TTTCGCTCGGCATTTTCAAGTAAGATTATCTTAAATTTAATCAAAGCCAAAAAAAGATTTTATTTTGACAAAAACACTTT
AAAAGAAGAACATCAAGTCTTAAAATACTTAAATTTCATAGAAAAAGCCTTAAATTTTAAAGCCACTTCAAATGCTTTAA
AACTCCCTATTAAAGCAAAATCAACTCAAAAAATTTTAGGTATAAACCCAGGCGCACATTTTGGAAGTGCAAAAAGATGG
GAAGCAAGTTATTTTGCAAGGGTAGCAAAAGAATTTAGCTCAACTCATAAAATTTTAATCTTTGGAGTAAAAAGTGAGAG
AGAAATTTGCGATAGCATAGAAAATTTATTATTAAAAGATGGTATAAAAGCTAAAAATTTATGCGGAAAAACCAGCATTT
TTACTCTTTGTAAAAATATATCTATGCTTGATTTACTCATCACAAATGATAGCGGGCCTATGCATATAGGTGCAGTTTAT
GGGGTAAAAACCATAGCTATTTTTGGCTCGACTAAATTCAGCCAAACATCACCTTGGCAAGAAAATGCTACAATAGCGCA
TTTAAATTTAGCTTGTATGCCTTGTATGCAAAAAATTTGTCCTTTAAAACATCATAAATGCATGAAAGATTTAAAACCTG
CTATGGTGATAAATTTAGCAAAAGAATTGCAAAAAATATAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(109-284)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  waaF Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.444

100

0.663