Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   IMC76_RS06910 Genome accession   NZ_CP063078
Coordinates   1266072..1266461 (+) Length   129 a.a.
NCBI ID   WP_025803291.1    Uniprot ID   -
Organism   Campylobacter corcagiensis strain 2016D-0077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1261072..1271461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMC76_RS06890 (IMC76_06890) - 1261205..1263145 (-) 1941 WP_025803287.1 RNB domain-containing ribonuclease -
  IMC76_RS06895 (IMC76_06895) ilvC 1263223..1264245 (+) 1023 WP_025803288.1 ketol-acid reductoisomerase -
  IMC76_RS06900 (IMC76_06900) - 1264248..1265315 (+) 1068 WP_025803289.1 divergent polysaccharide deacetylase family protein -
  IMC76_RS06905 (IMC76_06905) - 1265299..1266075 (+) 777 WP_025803290.1 DNA-processing protein DprA -
  IMC76_RS06910 (IMC76_06910) dprB 1266072..1266461 (+) 390 WP_025803291.1 Holliday junction resolvase RuvX Machinery gene
  IMC76_RS06915 (IMC76_06915) napA 1266597..1269380 (+) 2784 WP_025803292.1 nitrate reductase catalytic subunit NapA -
  IMC76_RS06920 (IMC76_06920) napG 1269386..1270141 (+) 756 WP_025803293.1 ferredoxin-type protein NapG -
  IMC76_RS06925 (IMC76_06925) napH 1270141..1270926 (+) 786 WP_025803294.1 quinol dehydrogenase ferredoxin subunit NapH -
  IMC76_RS06930 (IMC76_06930) - 1270923..1271438 (+) 516 WP_025803295.1 nitrate reductase cytochrome c-type subunit -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14044.32 Da        Isoelectric Point: 10.4275

>NTDB_id=492785 IMC76_RS06910 WP_025803291.1 1266072..1266461(+) (dprB) [Campylobacter corcagiensis strain 2016D-0077]
MIAGLDIGLKRIGIALGYPNGVVVPINAVLRKNRKQASNDVSKVLKEWGVKTIVVGVPLGGSSEDEMRRRVKHFVGLLDF
SGEVFYQDESFSSIEASSLGVVNQRKKDGKLDSLSAKIIVERFLSGITK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=492785 IMC76_RS06910 WP_025803291.1 1266072..1266461(+) (dprB) [Campylobacter corcagiensis strain 2016D-0077]
GTGATAGCTGGACTTGATATTGGGCTTAAAAGAATAGGAATTGCCTTAGGATACCCAAATGGCGTTGTAGTGCCTATAAA
TGCAGTACTACGAAAAAACCGCAAACAAGCATCTAATGATGTAAGCAAGGTTTTAAAAGAGTGGGGAGTTAAAACTATAG
TAGTTGGCGTTCCACTTGGTGGAAGTAGCGAAGATGAGATGAGAAGAAGAGTCAAACATTTTGTTGGGCTACTTGATTTT
AGTGGGGAAGTTTTTTATCAAGATGAGAGCTTTTCAAGTATAGAAGCAAGTAGTCTTGGCGTTGTAAATCAAAGAAAAAA
AGATGGCAAACTAGATAGCTTATCAGCTAAGATAATAGTTGAGAGATTTTTATCTGGAATAACAAAATAA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-125)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

46.667

100

0.488