NTDB

Overview

Name	waaF	Type	Regulator
Locus tag	IMC76_RS05980	Genome accession	NZ_CP063078
Coordinates	1073727..1074674 (-)	Length	315 a.a.
NCBI ID	WP_025803226.1	Uniprot ID	A0A7M1LDW7
Organism	Campylobacter corcagiensis strain 2016D-0077
Function	repress natural transformation (predicted from homology) Competence regulation

Genomic Context

Location: 1068727..1079674

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMC76_RS05955 (IMC76_05955)	mnmE	1068945..1070267 (+)	1323	WP_025803221.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-
IMC76_RS05960 (IMC76_05960)	gmhB	1070272..1070784 (+)	513	WP_034971506.1	D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase	-
IMC76_RS05965 (IMC76_05965)	rfaD	1070834..1071802 (+)	969	WP_025803223.1	ADP-glyceromanno-heptose 6-epimerase	-
IMC76_RS05970 (IMC76_05970)	rfaE1	1071795..1073174 (+)	1380	WP_025803224.1	D-glycero-beta-D-manno-heptose-7-phosphate kinase	-
IMC76_RS05975 (IMC76_05975)	-	1073180..1073740 (+)	561	WP_034971523.1	D-sedoheptulose 7-phosphate isomerase	-
IMC76_RS05980 (IMC76_05980)	waaF	1073727..1074674 (-)	948	WP_025803226.1	lipopolysaccharide heptosyltransferase II	Regulator
IMC76_RS05985 (IMC76_05985)	-	1074658..1075689 (-)	1032	WP_025803227.1	glycosyltransferase family 4 protein	-
IMC76_RS05990 (IMC76_05990)	-	1075763..1076692 (+)	930	WP_025803228.1	glycosyltransferase family 9 protein	-
IMC76_RS05995 (IMC76_05995)	-	1076687..1077778 (-)	1092	WP_025803229.1	glycosyltransferase family 4 protein	-
IMC76_RS06000 (IMC76_06000)	-	1077867..1078943 (+)	1077	WP_025803230.1	glycosyltransferase family 9 protein	-

Sequence

Protein

Download Length: 315 a.a. Molecular weight: 36019.19 Da Isoelectric Point: 10.0685

                                >NTDB_id=492783 IMC76_RS05980 WP_025803226.1 1073727..1074674(-) (waaF) [Campylobacter corcagiensis strain 2016D-0077]

MKIFIELPTWLGDGVMASMAVENIALNFPKAKITFFGSFASTSLYQNHPNLEKIVIDESKKTKFRYIKLYQTIKSFDKFD

IAISFRSHFATKFSMFFLKAKKKYIFDKNSYQGHQAEKYLDFVTKSLNLDQKQSELKLYFKPKIFSKKTLGLNPGASYGS

AKRWYPSYFAEVATALSKEYDILIFGTKNEAKICNEIADILKEKNINFINLCGKTSIQELCQNIAGLSLFITNDSGPMHI

AASYKTPTIALFGPTRWFETSPYKNSKSKIVRLDLACMPCMKRTCPIKTHKCMKNLTPDMVLKAYKELNLTSINP

Nucleotide

Download Length: 948 bp

                                >NTDB_id=492783 IMC76_RS05980 WP_025803226.1 1073727..1074674(-) (waaF) [Campylobacter corcagiensis strain 2016D-0077]

ATGAAAATCTTTATTGAACTTCCTACTTGGCTTGGGGACGGGGTTATGGCAAGTATGGCTGTTGAAAACATAGCGTTAAA

TTTTCCTAAAGCAAAGATTACATTTTTTGGCTCATTTGCTTCAACTTCTTTATATCAAAATCATCCAAATTTAGAAAAAA

TAGTCATAGATGAGAGTAAAAAAACCAAATTTAGATATATAAAGCTTTATCAAACTATAAAAAGCTTTGATAAATTTGAT

ATAGCTATAAGTTTTCGAAGCCATTTTGCTACTAAATTTAGTATGTTTTTTCTAAAAGCTAAAAAAAAGTATATCTTTGA

TAAAAACTCATATCAAGGTCATCAAGCAGAAAAATATTTAGATTTTGTAACAAAAAGTCTAAATTTAGACCAAAAACAAA

GTGAACTAAAGTTATATTTTAAGCCAAAAATATTTAGCAAAAAAACACTCGGTCTAAATCCAGGTGCAAGCTATGGAAGT

GCGAAAAGATGGTATCCTAGTTACTTCGCAGAAGTTGCTACTGCTTTATCAAAAGAGTATGATATCTTAATATTTGGCAC

AAAAAATGAAGCTAAAATCTGTAACGAAATAGCTGATATCTTAAAAGAGAAAAATATAAATTTTATAAACTTATGTGGTA

AAACTAGCATCCAAGAGCTTTGCCAAAATATCGCAGGATTATCACTTTTTATAACAAACGATAGTGGTCCTATGCATATC

GCAGCGTCTTATAAAACACCAACTATAGCACTATTTGGTCCTACAAGGTGGTTTGAGACAAGCCCTTATAAAAACTCAAA

ATCTAAGATAGTTCGCCTTGATTTAGCCTGTATGCCTTGTATGAAAAGAACTTGCCCTATAAAAACGCACAAGTGCATGA

AAAATTTAACTCCTGATATGGTTTTAAAAGCCTACAAAGAGTTAAATTTAACCTCTATAAATCCTTAA

Domains

Predicted by InterproScan.

Glycosyltransferase family 9 (heptosyltransferase) (Glyco_transf_9)

(123-288)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A7M1LDW7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
waaF	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	52.681	100	0.53

Detailed information NTG0492783