Detailed information NTG0049277

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: M062_RS19110
• Genome accession: NC_021577
• Coordinates: 4114503..4115507 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa RP73
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4109503..4120507

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M062_RS19095 (M062_19155)	-	4109986..4110993 (+)	1008	WP_003098486.1	TolB family protein	-
M062_RS19100 (M062_19160)	mutS	4111119..4113686 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
M062_RS19105 (M062_19165)	fdxA	4113753..4114076 (+)	324	WP_003092272.1	ferredoxin FdxA	-
M062_RS19110 (M062_19170)	rpoS	4114503..4115507 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
M062_RS19115 (M062_19175)	-	4115612..4116505 (-)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
M062_RS19120 (M062_19180)	-	4116551..4117186 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
M062_RS19125 (M062_19185)	surE	4117219..4117968 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
M062_RS19130 (M062_19190)	truD	4117956..4119023 (-)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
M062_RS19135 (M062_19195)	ispF	4119020..4119493 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
M062_RS19140 (M062_19200)	fghA	4119564..4120415 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=49277 M062_RS19110 WP_003113871.1 4114503..4115507(-) (rpoS) [Pseudomonas aeruginosa RP73]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=49277 M062_RS19110 WP_003113871.1 4114503..4115507(-) (rpoS) [Pseudomonas aeruginosa RP73]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653