Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IIE27_RS15335 Genome accession   NZ_CP063074
Coordinates   3143824..3144438 (-) Length   204 a.a.
NCBI ID   WP_016152483.1    Uniprot ID   R8X084
Organism   Citrobacter braakii strain JPG1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3138824..3149438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IIE27_RS15320 (IIE27_15190) helD 3139048..3141102 (-) 2055 WP_019076416.1 DNA helicase IV -
  IIE27_RS15325 (IIE27_15195) - 3141228..3141674 (+) 447 WP_016152485.1 YccF domain-containing protein -
  IIE27_RS15330 (IIE27_15200) yccS 3141693..3143846 (+) 2154 WP_016152484.1 YccS family putative transporter -
  IIE27_RS15335 (IIE27_15205) sxy/tfoX 3143824..3144438 (-) 615 WP_016152483.1 TfoX/Sxy family DNA transformation protein Regulator
  IIE27_RS15340 (IIE27_15210) sulA 3144655..3145164 (+) 510 WP_019076414.1 SOS-induced cell division inhibitor SulA -
  IIE27_RS15345 (IIE27_15215) ompA 3145522..3146580 (+) 1059 WP_016156137.1 porin OmpA -
  IIE27_RS15350 (IIE27_15220) matP 3146679..3147131 (-) 453 WP_016152480.1 macrodomain Ter protein MatP -
  IIE27_RS15355 (IIE27_15225) - 3147317..3149077 (+) 1761 WP_016156136.1 AAA family ATPase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23168.52 Da        Isoelectric Point: 8.6113

>NTDB_id=492764 IIE27_RS15335 WP_016152483.1 3143824..3144438(-) (sxy/tfoX) [Citrobacter braakii strain JPG1]
MKEKSYARIYKSQEYLASLGTIHYRSLFGGYSLTVGDTVFAMVASGELYLRACEQSAQYCVKNSPVWLTFIKRGRPVVLN
YYQVNDTLWQNQQQLVSLSQFSLDAAVKEKQSRFAQHRLRELPNMTFHLETLLNEAGIKDEGTLRSLGAQMCWLKLRQNN
PALTVKILYALEGAVDGVHEAALPATRRQELVEWVSSLTPEPGY

Nucleotide


Download         Length: 615 bp        

>NTDB_id=492764 IIE27_RS15335 WP_016152483.1 3143824..3144438(-) (sxy/tfoX) [Citrobacter braakii strain JPG1]
ATGAAAGAAAAGTCTTATGCAAGAATCTATAAATCACAAGAATATCTGGCTTCTCTGGGAACAATTCACTACCGCTCACT
GTTTGGCGGCTATAGTCTGACGGTTGGTGATACGGTCTTTGCCATGGTTGCCAGCGGTGAGTTATATCTTCGCGCCTGTG
AGCAGAGCGCCCAGTACTGTGTAAAAAATTCTCCTGTCTGGCTAACATTTATCAAGCGCGGACGTCCGGTTGTACTCAAT
TATTACCAGGTGAACGATACCCTGTGGCAGAACCAGCAGCAGTTAGTATCGCTATCACAATTTTCACTCGATGCAGCCGT
TAAGGAAAAACAGAGTCGCTTTGCACAACATCGCCTGCGGGAATTACCGAATATGACGTTTCATCTGGAGACCTTGCTAA
ATGAAGCAGGAATTAAGGATGAGGGGACATTGCGATCGTTGGGAGCTCAGATGTGCTGGTTGAAACTTCGGCAAAATAAC
CCTGCCTTAACGGTAAAAATACTCTATGCCCTTGAAGGAGCGGTTGACGGGGTGCATGAAGCCGCGCTCCCGGCGACGCG
TCGCCAGGAGCTGGTGGAGTGGGTGAGTTCTCTTACGCCGGAACCGGGGTATTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R8X084

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

69.154

98.529

0.681