NTDB

Overview

Name	radA	Type	Machinery gene
Locus tag	IMF22_RS27990	Genome accession	NZ_CP063073
Coordinates	6243635..6245002 (+)	Length	455 a.a.
NCBI ID	WP_017139308.1	Uniprot ID	A0A2P8L9W2
Organism	Pseudomonas poae strain PMA22
Function	homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 6238635..6250002

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IMF22_RS27965 (IMF22_27965)	-	6238753..6239463 (-)	711	WP_197626707.1	helix-turn-helix transcriptional regulator	-
IMF22_RS27970 (IMF22_27970)	-	6239919..6240695 (+)	777	WP_197626708.1	ferredoxin--NADP reductase	-
IMF22_RS27975 (IMF22_27975)	mscL	6240757..6241173 (-)	417	WP_053137928.1	large-conductance mechanosensitive channel protein MscL	-
IMF22_RS27980 (IMF22_27980)	-	6241461..6243002 (+)	1542	WP_197626709.1	catalase	-
IMF22_RS27985 (IMF22_27985)	-	6243060..6243599 (+)	540	WP_159960026.1	ankyrin repeat domain-containing protein	-
IMF22_RS27990 (IMF22_27990)	radA	6243635..6245002 (+)	1368	WP_017139308.1	DNA repair protein RadA	Machinery gene
IMF22_RS27995 (IMF22_27995)	-	6245030..6245764 (+)	735	WP_197626710.1	hypothetical protein	-
IMF22_RS28000 (IMF22_28000)	-	6245769..6246137 (-)	369	WP_197626711.1	PilZ domain-containing protein	-
IMF22_RS28005 (IMF22_28005)	-	6246312..6248378 (+)	2067	WP_197626712.1	carbon starvation CstA family protein	-
IMF22_RS28010 (IMF22_28010)	-	6248394..6248591 (+)	198	WP_003194308.1	YbdD/YjiX family protein	-
IMF22_RS28015 (IMF22_28015)	yjiA	6248772..6249731 (+)	960	WP_197626713.1	GTPase	-

Sequence

Protein

Download Length: 455 a.a. Molecular weight: 48749.33 Da Isoelectric Point: 7.1316

                                >NTDB_id=492748 IMF22_RS27990 WP_017139308.1 6243635..6245002(+) (radA) [Pseudomonas poae strain PMA22]

MAKAKRMYGCTECGATFPKWAGQCTECGAWNTLTETMIESGGAAAPTGRAGWTGQQAQIKTLAEVSVEEIPRFSTASGEL

DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCSIASRMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIESIIA

TARIEKPKVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE

GESDGRLRLLRAVKNRFGAVNELGVFAMTDRGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA

NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNKPLPHDLLVFGEVGLSG

EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEMPAGLKVIGVTRLEQALDALFE

Nucleotide

Download Length: 1368 bp

                                >NTDB_id=492748 IMF22_RS27990 WP_017139308.1 6243635..6245002(+) (radA) [Pseudomonas poae strain PMA22]

ATGGCAAAGGCCAAGCGCATGTACGGCTGCACCGAGTGCGGCGCGACCTTTCCCAAGTGGGCCGGCCAGTGCACCGAGTG

CGGCGCGTGGAACACCCTGACGGAAACCATGATTGAAAGCGGCGGCGCTGCGGCCCCCACCGGCCGTGCCGGCTGGACCG

GGCAACAGGCGCAGATCAAAACCCTGGCCGAAGTCAGCGTTGAAGAGATCCCGCGCTTCTCCACCGCCTCCGGCGAACTG

GACCGCGTACTCGGCGGCGGCCTGGTGGACGGCTCGGTGGTGTTGATCGGCGGTGACCCCGGCATCGGCAAATCGACCAT

CCTGCTGCAAACCCTGTGCAGCATCGCCAGCCGCATGCCGGCGCTGTACGTCACCGGTGAAGAATCCCAGCAGCAAGTGG

CCATGCGCGCCCGGCGCCTGGGCTTGCCCCAGGACCAACTGCGGGTGATGACCGAAACCTGCATCGAAAGCATCATCGCC

ACGGCCCGCATCGAAAAGCCCAAAGTCATGGTGATCGACTCGATCCAGACAATTTTCACCGAGCAGCTGCAATCGGCACC

GGGCGGCGTGTCCCAGGTGCGCGAGAGTGCGGCGCTGCTGGTGCGGTATGCCAAGCAGAGCGGCACGGCGATTTTCCTGG

TCGGCCACGTGACCAAAGAAGGCGCGCTGGCCGGGCCGCGAGTGCTCGAACATATGGTCGACACCGTGCTGTATTTCGAA

GGCGAATCCGATGGTCGGCTCCGCTTGCTGCGGGCGGTGAAAAACCGCTTCGGCGCGGTCAACGAATTGGGCGTGTTCGC

CATGACTGACCGAGGCCTGAAAGAAGTCTCCAACCCATCGGCGATTTTTCTCACGCGTGCCCAGGAAGAAGTCCCGGGCA

GTGTGGTGATGGCCACGTGGGAAGGCACCCGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTGGATGACAGCCACTTGGCC

AACCCGCGCCGGGTCACCCTCGGGCTGGATCAGAACCGCTTGGCGATGCTGCTGGCGGTGTTGCACCGTCACGGCGGCAT

TCCCACCCACGACCAGGACGTGTTCCTTAACGTAGTCGGCGGGGTCAAGGTGTTGGAAACCGCCTCCGACCTGGCGTTGA

TGGCGGCGGTGATGTCCAGCCTGCGCAATAAGCCGCTGCCCCATGATTTGCTGGTGTTTGGTGAAGTCGGCCTGTCCGGC

GAAGTGCGCCCGGTGCCGAGTGGCCAGGAGCGCCTTAAAGAAGCCGCCAAACATGGCTTCAAGCGTGCGATTGTGCCCAA

GGGCAACGCGCCAAAAGAAATGCCCGCTGGGTTAAAGGTGATTGGCGTCACGCGCCTTGAGCAGGCGTTGGATGCACTGT

TCGAATAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(80-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A2P8L9W2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.672	100	0.499
radA	Streptococcus mitis SK321	47.059	100	0.475
radA	Streptococcus mitis NCTC 12261	46.739	100	0.473
radA	Streptococcus pneumoniae TIGR4	46.93	100	0.47
radA	Streptococcus pneumoniae R6	46.93	100	0.47
radA	Streptococcus pneumoniae Rx1	46.93	100	0.47
radA	Streptococcus pneumoniae D39	46.93	100	0.47

Detailed information NTG0492748