Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   IMX23_RS06680 Genome accession   NZ_CP063071
Coordinates   1350351..1352042 (+) Length   563 a.a.
NCBI ID   WP_185477433.1    Uniprot ID   -
Organism   Listeria seeligeri strain Sr73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1345351..1357042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX23_RS06655 (IMX23_06655) - 1345500..1346381 (+) 882 WP_185477431.1 polyprenyl synthetase family protein -
  IMX23_RS06660 (IMX23_06660) - 1346580..1346780 (+) 201 WP_012985572.1 cold-shock protein -
  IMX23_RS06665 (IMX23_06665) dxs 1346948..1348867 (+) 1920 WP_196319030.1 1-deoxy-D-xylulose-5-phosphate synthase -
  IMX23_RS06670 (IMX23_06670) - 1348864..1349688 (+) 825 WP_185383210.1 TlyA family RNA methyltransferase -
  IMX23_RS06675 (IMX23_06675) ahrC 1349879..1350328 (+) 450 WP_003747574.1 transcriptional regulator AhrC/ArgR -
  IMX23_RS06680 (IMX23_06680) recN 1350351..1352042 (+) 1692 WP_185477433.1 DNA repair protein RecN Machinery gene
  IMX23_RS06685 (IMX23_06685) - 1352171..1353037 (+) 867 WP_196319031.1 phosphate acyltransferase -
  IMX23_RS06690 (IMX23_06690) buk 1353174..1354241 (+) 1068 WP_139590833.1 butyrate kinase -
  IMX23_RS06695 (IMX23_06695) lpdA 1354255..1355682 (+) 1428 WP_003747581.1 dihydrolipoyl dehydrogenase -
  IMX23_RS06700 (IMX23_06700) - 1355707..1356702 (+) 996 WP_003747584.1 thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha -

Sequence

Protein


Download         Length: 563 a.a.        Molecular weight: 63555.33 Da        Isoelectric Point: 5.2608

>NTDB_id=492702 IMX23_RS06680 WP_185477433.1 1350351..1352042(+) (recN) [Listeria seeligeri strain Sr73]
MLQEMTIKNFAIIESLSLSFQEGMTVLTGETGAGKSIIIDALGLLVGGRGSTDFIRHGEERLELQGLFALAEDNFACRNA
LLEHGIDATDDMVVLERSLFRSGKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFAADKIKPAL
TKYQANFKEYQTISKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQKNILANFEKLNENLQGAYTAIQG
EPGGLEFIGEAMRQMDSAAGIHTDYKAVSEAISSSYYMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKT
IEDIIHYEQEISSEMEKLTDSESHVGHLETKLASLKTELTKQAGILTEIRKKAAITLEKQIKQELNQLYMEKAVFSVRFE
TNKMELTETGQDSIVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFSRHQGITSIIFDEVDTGVSGRVGQAIAEKIY
AVSVGSQVLCISHLPQVAAMANHHYYITKKVQNKRTTTSVAILHGDEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVK
QTY

Nucleotide


Download         Length: 1692 bp        

>NTDB_id=492702 IMX23_RS06680 WP_185477433.1 1350351..1352042(+) (recN) [Listeria seeligeri strain Sr73]
TTGCTTCAAGAAATGACAATTAAAAACTTTGCTATCATCGAATCACTTTCTTTAAGTTTTCAGGAAGGGATGACAGTATT
AACAGGGGAGACCGGTGCAGGTAAATCAATTATTATTGATGCGCTTGGTCTTCTTGTTGGCGGACGCGGTTCAACTGATT
TTATTCGTCACGGTGAGGAACGGCTTGAATTACAAGGCTTGTTCGCGCTTGCGGAGGATAATTTTGCTTGCCGTAATGCG
CTTTTAGAACATGGGATTGATGCAACGGATGACATGGTCGTTTTGGAACGCAGCTTATTTCGTTCAGGTAAAAATAGTTG
CAGAATCAATGGAAAACTTGTAACGACTGTATTACTTCGCCAAATCGGTTCGAAGTTGATTGATATCCATAGTCAGCATG
AGCACCAAGAATTGATGAACGAGGAATTTCATTTATCATTGTTAGATCGTTTTGCAGCAGATAAAATTAAACCAGCTTTA
ACCAAATATCAAGCAAATTTTAAAGAATATCAAACCATTTCGAAAGAATGGCAAAATTGGACTAAGAATGAACGGGAACT
TGCACAACGACTTGATATGCTTCGTTTTCAACAACAAGAAATCGAAAATGCTAATTTACAAGCTGGGGAAGAAGACCGTT
TACTGGAACAAAAAAATATTTTAGCTAATTTTGAGAAGTTAAATGAAAACTTGCAAGGGGCTTACACGGCAATTCAAGGG
GAGCCAGGCGGACTTGAATTTATCGGGGAAGCAATGCGTCAAATGGATTCAGCTGCAGGTATTCATACAGATTATAAAGC
AGTGAGTGAAGCGATTTCTTCAAGTTACTACATGTTAGAAGATAGCATGAGCCAAATTAGACAATCGCTAGACCAATTAG
AGTTCCAACCAGAAGAACTCAACCAAATTGAATCTCGCTTAAATGACTTGAATCAGTTGAAACGCAAATATGGTAAAACA
ATTGAAGACATTATCCACTACGAACAAGAAATTAGTAGTGAAATGGAAAAATTAACCGATAGTGAATCTCATGTCGGTCA
TCTAGAAACAAAACTAGCCAGTTTGAAAACAGAACTTACGAAACAAGCAGGCATTTTAACAGAAATTCGTAAAAAAGCGG
CAATCACTTTAGAAAAACAAATTAAACAAGAATTAAATCAACTCTATATGGAAAAAGCCGTTTTTAGTGTTCGCTTTGAA
ACGAACAAAATGGAATTAACGGAAACCGGACAAGATAGCATTGTTTTCTATATGTCTACCAATCCTGGGGAACCACTAAA
GCCACTAGCAAAAATCGCTTCAGGCGGCGAATTATCTCGGATGATGCTTGCGCTAAAAACAATTTTTTCGAGACACCAAG
GAATCACATCCATTATCTTTGATGAAGTAGATACTGGAGTAAGTGGTCGCGTTGGTCAAGCTATTGCAGAGAAAATTTAT
GCCGTCTCAGTTGGCTCACAAGTTCTTTGTATCAGTCATTTACCGCAAGTTGCTGCGATGGCTAATCATCATTACTACAT
TACGAAAAAGGTACAAAATAAGCGCACAACCACTTCTGTAGCTATTCTCCATGGTGACGAAAAAGTAGAAGAAATCAGCC
GAATGATAGCGGGAATCGAAGTGACAGAACTAACCAAACAACATGCCAAAGAAATGATTGAACAAGCCGAAAAAGTGAAA
CAGACTTATTAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-513)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

52.083

100

0.533