Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IMX23_RS01195 Genome accession   NZ_CP063071
Coordinates   251537..252910 (+) Length   457 a.a.
NCBI ID   WP_003745317.1    Uniprot ID   E3ZLR0
Organism   Listeria seeligeri strain Sr73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 246537..257910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX23_RS01175 (IMX23_01175) - 246885..247343 (+) 459 WP_046327988.1 CtsR family transcriptional regulator -
  IMX23_RS01180 (IMX23_01180) - 247357..247875 (+) 519 WP_185477739.1 UvrB/UvrC motif-containing protein -
  IMX23_RS01185 (IMX23_01185) - 247872..248894 (+) 1023 WP_196318810.1 protein arginine kinase -
  IMX23_RS01190 (IMX23_01190) - 248923..251385 (+) 2463 WP_185383930.1 ATP-dependent Clp protease ATP-binding subunit -
  IMX23_RS01195 (IMX23_01195) radA 251537..252910 (+) 1374 WP_003745317.1 DNA repair protein RadA Machinery gene
  IMX23_RS01200 (IMX23_01200) - 253044..254117 (+) 1074 WP_003750735.1 PIN/TRAM domain-containing protein -
  IMX23_RS01205 (IMX23_01205) ispD 254137..254847 (+) 711 WP_185383932.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  IMX23_RS01210 (IMX23_01210) gltX 254870..256345 (+) 1476 WP_196318811.1 glutamate--tRNA ligase -
  IMX23_RS01215 (IMX23_01215) epsC 256745..257359 (+) 615 WP_185499177.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49911.61 Da        Isoelectric Point: 7.6580

>NTDB_id=492693 IMX23_RS01195 WP_003745317.1 251537..252910(+) (radA) [Listeria seeligeri strain Sr73]
MAKAKRTTKFVCQACGYESPKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEVAKATPITQIASEEEARVETRMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEIGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAIAVSVASSYRDKPTKSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGAWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=492693 IMX23_RS01195 WP_003745317.1 251537..252910(+) (radA) [Listeria seeligeri strain Sr73]
ATGGCTAAGGCAAAAAGGACGACCAAATTTGTATGTCAGGCATGTGGATATGAATCGCCAAAGTGGATGGGGAAATGTCC
AAATTGCAATGAATGGAATCAAATGGTGGAAGCGCTAGAACCATCCAAAAAATCGCGCTCTGCTTTTAATCATACAGGAG
AAGTAGCGAAGGCAACTCCAATTACACAAATTGCGAGTGAAGAAGAAGCTCGAGTGGAAACGAGGATGCCTGAATTAAAT
CGAGTTCTTGGTGGAGGGGTCGTTCCAGGTTCCATGGTCCTAGTTGGTGGGGATCCAGGTATTGGTAAATCAACTTTACT
ACTTCAAGTCTCCGCACAACTGACACTAACAAATAAAAAAGTATTATATATTTCAGGGGAAGAATCAATTAAACAAACAA
AACTACGAGCTGAACGATTACAAGTTTCAGGAGATAATTTATATGTCTATGCAGAAACAAATTTAGAAGCAGTGCAAGAA
ACAATTGATTTTGTAAAACCGGATTTTGTCGTAATTGATTCAATCCAAACAGTTTATCATCCTGATGTAACAAGCGCTGC
CGGGAGTGTATCACAAGTTCGTGAATGTACAGCTGCTTTAATGCGAATTGCTAAAATGCAAAATATCGCTATCTTCATAG
TTGGCCACGTAACAAAAGAAGGAGCAATTGCTGGGCCACGTTTGCTTGAGCACATGGTAGATACTGTGCTTTATTTTGAA
GGTGAGCGTCATCATGCTTACCGGATTTTGCGCGCTGTGAAAAACCGTTTTGGCTCAACAAATGAAATTGGGATTTTTGA
AATGCGTGATGTGGGGCTCGTTGAAGTTGCAAATCCATCTGAGGTTTTTTTAGAGGAACGTTTAGAAGGGGCTTCGGGGT
CAACGGTTGTTGCATCTATGGAAGGAACTCGCCCAGTACTTGTGGAAATTCAAGCGCTTGTTTCGCCAACGATGTTTGGG
AATGCTAAACGAATGGCAACCGGAATTGATTATAATAAAGTATCGCTAATTATGGCCGTTTTAGAAAAAAGGGTTGGTTT
AATGCTACAAAATCAAGATGCTTATTTGAAAGCGGCGGGTGGCGTTAAGCTGGATGAACCAGCAGTCGATTTGGCTATTG
CGGTTAGTGTGGCGTCTAGTTATAGGGATAAGCCGACAAAAAGTACCGATTGCTTTATTGGCGAACTCGGGCTGACAGGA
GAAATTCGTCGTGTAGCAAGAATAGAACAACGAGTGCAAGAGGCAGCTAAGCTAGGTTTTAAACGGATTTTTATTCCGAA
AAATAATGAAGGTGCCTGGAAAATACCGAAAGACGTGCAAGTGGTTGGCGTAGAAACGATTGGAGAAGCTTTAAAGAAGG
CATTACCTGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(63-221)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB E3ZLR0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

69.079

99.781

0.689
  radA Streptococcus mitis NCTC 12261

65.714

99.562

0.654
  radA Streptococcus pneumoniae D39

65.487

98.906

0.648
  radA Streptococcus pneumoniae TIGR4

65.487

98.906

0.648
  radA Streptococcus pneumoniae R6

65.487

98.906

0.648
  radA Streptococcus pneumoniae Rx1

65.487

98.906

0.648
  radA Streptococcus mitis SK321

65.265

98.906

0.646