Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   IMX20_RS06140 Genome accession   NZ_CP063065
Coordinates   1311853..1313616 (-) Length   587 a.a.
NCBI ID   WP_232089588.1    Uniprot ID   -
Organism   Aerococcus urinaeequi strain T43     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1306853..1318616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX20_RS06100 (IMX20_06100) - 1307457..1307627 (+) 171 WP_016896865.1 hypothetical protein -
  IMX20_RS06105 (IMX20_06105) - 1307735..1308103 (+) 369 WP_026466285.1 winged helix-turn-helix transcriptional regulator -
  IMX20_RS06110 (IMX20_06110) - 1308253..1308513 (-) 261 WP_069286780.1 metal-sensitive transcriptional regulator -
  IMX20_RS06115 (IMX20_06115) - 1308513..1308809 (-) 297 WP_197558044.1 rhodanese-like domain-containing protein -
  IMX20_RS06120 (IMX20_06120) - 1308809..1310461 (-) 1653 WP_197558045.1 FAD-dependent oxidoreductase -
  IMX20_RS06125 (IMX20_06125) - 1310461..1310766 (-) 306 WP_197558046.1 rhodanese-like domain-containing protein -
  IMX20_RS06130 (IMX20_06130) trxA 1310789..1311109 (-) 321 WP_197558047.1 thioredoxin -
  IMX20_RS06135 (IMX20_06135) yidD 1311090..1311386 (-) 297 WP_197559123.1 membrane protein insertion efficiency factor YidD -
  IMX20_RS06140 (IMX20_06140) rcrQ 1311853..1313616 (-) 1764 WP_232089588.1 ABC transporter ATP-binding protein Regulator
  IMX20_RS06145 (IMX20_06145) rcrP 1313609..1315384 (-) 1776 WP_197558048.1 ABC transporter ATP-binding protein Regulator
  IMX20_RS06150 (IMX20_06150) - 1315413..1315862 (-) 450 WP_197558049.1 MarR family winged helix-turn-helix transcriptional regulator -
  IMX20_RS06155 (IMX20_06155) purD 1316123..1317376 (-) 1254 WP_197558050.1 phosphoribosylamine--glycine ligase -

Sequence

Protein


Download         Length: 587 a.a.        Molecular weight: 64758.36 Da        Isoelectric Point: 4.6312

>NTDB_id=492674 IMX20_RS06140 WP_232089588.1 1311853..1313616(-) (rcrQ) [Aerococcus urinaeequi strain T43]
MTKKKDANQPSLMVNIMKYAREYRWPFVVAVILAMGGSIASIIGPDQLGDMTDKITEGLMSPDGIDLERISQIAITLVVI
YVLGAVFTYIQTFLMATIIQNFSKKLRKNVSDKIDRLTLRYFDSHSHGDTLSRVTNDLDLVGQSLNQTMPSFIPSVTLLL
GTLVMMFYNNAILTLVALVSVVIGFAGIVLILGRSQGYFISQQKNLANVNSIAEESYTGQSVLTTINARNQMTETFSEAN
EALYDSVWHAQFLSGIMQPLMQFIGNFGYVAVSVVGSIMALNGDITLGVVVSFMVYVRMFTQPLGQLSQSFASFQSASAA
LNRVFEFLNEEEMVEETNLLSELPDVHGDVTFEHVHFGYEADQPIIKDFSVTAKSGQKIAIVGPTGAGKTTIVNLLMKFY
PIDSGEIYIDGKPTSEISRAAVHDQFSMVLQDTWLFEGTIRENLIFNQDHITDEMVESAAAAVGIDHFINTLPKGYDTVL
DDSVTLSVGQKQLFTIARALLKDAPLLILDEATSSVDTRTEVLLQEAMDKLMEGRTSFVIAHRLSTIRNADIILVMDHGN
IIEQGNHEALMAKGGFYADLYNSQFAK

Nucleotide


Download         Length: 1764 bp        

>NTDB_id=492674 IMX20_RS06140 WP_232089588.1 1311853..1313616(-) (rcrQ) [Aerococcus urinaeequi strain T43]
ATGACTAAGAAAAAAGATGCAAATCAACCTTCATTGATGGTGAATATTATGAAATATGCCCGGGAATATAGATGGCCCTT
TGTTGTGGCAGTTATCCTAGCAATGGGTGGCTCTATAGCATCTATTATCGGTCCTGACCAGTTAGGGGATATGACAGATA
AAATCACGGAAGGCTTGATGTCACCAGATGGGATTGACCTAGAGCGTATTTCACAAATTGCAATTACTTTAGTGGTTATC
TATGTCCTTGGGGCTGTCTTCACTTATATTCAAACCTTCTTGATGGCAACGATTATTCAAAACTTTTCAAAAAAATTACG
GAAGAATGTATCCGATAAAATTGACCGTTTGACTTTACGCTATTTTGATAGCCATAGTCACGGGGATACCTTAAGTCGGG
TAACCAACGACTTGGACTTGGTTGGACAATCACTTAACCAAACCATGCCGTCATTTATCCCATCAGTGACTTTATTGCTT
GGTACCCTAGTGATGATGTTCTACAACAACGCGATTCTAACCCTAGTAGCCTTGGTTTCTGTGGTTATTGGTTTCGCAGG
AATTGTCCTCATTCTAGGCCGTTCTCAAGGTTATTTCATTTCACAACAAAAAAATCTAGCCAATGTGAACAGTATTGCTG
AAGAGTCATACACTGGTCAAAGTGTTTTAACAACTATTAACGCCCGTAACCAAATGACTGAAACCTTCAGCGAAGCGAAC
GAAGCTTTATATGATAGCGTTTGGCATGCCCAATTCTTGTCAGGTATCATGCAACCGTTGATGCAATTCATCGGAAACTT
TGGTTATGTAGCTGTCTCTGTTGTCGGTTCAATTATGGCCTTAAATGGCGACATTACCCTCGGGGTAGTTGTGTCATTCA
TGGTTTACGTCCGTATGTTCACTCAACCACTAGGTCAATTATCACAATCATTCGCCTCATTCCAATCTGCGTCAGCAGCC
TTAAATCGTGTATTTGAGTTTCTAAATGAAGAGGAAATGGTAGAAGAAACAAACCTATTGAGCGAATTGCCGGATGTCCA
CGGTGACGTGACTTTTGAACACGTACACTTTGGCTATGAAGCAGATCAACCGATTATCAAAGACTTCTCAGTAACCGCTA
AATCAGGTCAGAAGATTGCTATCGTAGGACCTACCGGAGCTGGGAAAACGACAATCGTCAACTTGCTGATGAAATTCTAT
CCAATCGACTCAGGTGAAATTTACATTGATGGGAAACCAACAAGTGAAATTTCACGTGCAGCTGTCCACGACCAATTCTC
AATGGTGTTACAAGATACTTGGTTATTTGAAGGCACCATTCGTGAGAACTTAATCTTCAACCAAGACCACATTACGGATG
AGATGGTTGAATCAGCAGCCGCTGCAGTAGGTATTGACCACTTTATCAATACATTACCTAAAGGATATGATACGGTTTTA
GATGATTCAGTTACTTTATCAGTTGGACAAAAACAATTGTTTACGATTGCGCGCGCCTTGTTGAAAGATGCACCTTTATT
GATATTAGATGAAGCGACATCTTCAGTCGATACACGTACAGAAGTCTTATTACAAGAAGCTATGGACAAATTGATGGAAG
GTAGAACATCATTCGTGATCGCCCACCGTTTATCAACTATCCGTAACGCTGATATTATCTTAGTTATGGACCACGGTAAT
ATCATTGAACAAGGTAACCATGAGGCTTTAATGGCTAAGGGTGGCTTCTATGCGGATCTTTATAACAGTCAGTTTGCAAA
ATAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(28-304)

ABC transporter (ABC_tran)

(367-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

59.31

98.807

0.586