Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   KIM40_RS18970 Genome accession   NZ_CP074785
Coordinates   3639295..3639924 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain 95_0274     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3634295..3644924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KIM40_RS18955 (KIM40_18760) helD 3634537..3636591 (-) 2055 WP_001297106.1 DNA helicase IV -
  KIM40_RS18960 (KIM40_18765) yccF 3636714..3637160 (+) 447 WP_001261235.1 YccF domain-containing protein -
  KIM40_RS18965 (KIM40_18770) yccS 3637170..3639332 (+) 2163 WP_000875023.1 YccS family putative transporter -
  KIM40_RS18970 (KIM40_18775) sxy/tfoX 3639295..3639924 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  KIM40_RS18975 (KIM40_18780) sulA 3640143..3640652 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  KIM40_RS18980 (KIM40_18785) ompA 3641009..3642049 (+) 1041 WP_000750416.1 porin OmpA -
  KIM40_RS18985 (KIM40_18790) matP 3642124..3642576 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  KIM40_RS18990 (KIM40_18795) ycbZ 3642762..3644522 (+) 1761 WP_000156528.1 AAA family ATPase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=492670 KIM40_RS18970 WP_000839153.1 3639295..3639924(-) (sxy/tfoX) [Escherichia coli strain 95_0274]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=492670 KIM40_RS18970 WP_000839153.1 3639295..3639924(-) (sxy/tfoX) [Escherichia coli strain 95_0274]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1