Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   IMX20_RS02700 Genome accession   NZ_CP063065
Coordinates   562407..564203 (+) Length   598 a.a.
NCBI ID   WP_197558842.1    Uniprot ID   A0A7M1KTD5
Organism   Aerococcus urinaeequi strain T43     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 557407..569203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX20_RS02680 (IMX20_02685) - 558226..558927 (-) 702 WP_016897705.1 adaptor protein MecA -
  IMX20_RS02685 (IMX20_02690) spxA 559057..559473 (-) 417 WP_197558839.1 transcriptional regulator SpxA -
  IMX20_RS02690 (IMX20_02695) trpS 559688..560683 (+) 996 WP_197558840.1 tryptophan--tRNA ligase -
  IMX20_RS02695 (IMX20_02700) - 561242..562339 (+) 1098 WP_197558841.1 competence protein CoiA -
  IMX20_RS02700 (IMX20_02705) pepF 562407..564203 (+) 1797 WP_197558842.1 oligoendopeptidase F Regulator
  IMX20_RS02705 (IMX20_02710) - 564325..565020 (-) 696 WP_197558843.1 DsbA family protein -
  IMX20_RS02710 (IMX20_02715) - 565240..565830 (-) 591 WP_197558844.1 CYTH domain-containing protein -
  IMX20_RS02715 (IMX20_02720) - 566039..566728 (+) 690 WP_197558845.1 GTP pyrophosphokinase family protein -
  IMX20_RS02720 (IMX20_02725) - 566821..567660 (+) 840 WP_197558846.1 NAD kinase -
  IMX20_RS02725 (IMX20_02730) - 567744..568625 (+) 882 WP_197559106.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 67827.45 Da        Isoelectric Point: 4.4843

>NTDB_id=492661 IMX20_RS02700 WP_197558842.1 562407..564203(+) (pepF) [Aerococcus urinaeequi strain T43]
MAKIFEVKPRNEVDSAFQWDLTSIFPDDQAFENSLSGFPKKADAFQDYKGTLDQGADQVVTVLESLLAVSRELESLYVYA
HLKHDQDTGDNKYLTYNSQAGALLAQVSEKISWFEPEVLAVSEDVQKTLEDHSEYGHFFRELFAKKAHVLSPSEEALLAG
ASEIFGVSSTTFSLLNNADLKFGKVKDEEGNDVTLSHGSYGVLLESADRSVRENAFKQLYATYEGVKNTNASLMSGNIKG
HNYTAKIRHYDSARQKALDNNNIPESVYDTLVDTVRKNTNLLHEYVALRKDMLGLDDLQMWDMYTPLTGDAPVKFTYEEA
KEITFKALAPLGDQYLKDLAKAFDEKWIDVYENEGKRSGAYSSGAYDTNPYILLNWQDSLNDLYTLVHELGHSMHSYYTR
SNQPYVYGDYSIFVAEIASTTNENLLTSYLLDTIEDKDAQIYILNHYLDGVKGTIFRQTQFAEFEKFMHESDANGQPLTA
DFLSENYFELNKAYYGPSIGEDKTIALEWSRIPHFYMNYYVYQYATGFSAANTLAKRLVEGEEGAVDKYLTYLKSGSSDF
PINVMQKAGIDMTNATYIEETFAQFEQRLAELKDLLNK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=492661 IMX20_RS02700 WP_197558842.1 562407..564203(+) (pepF) [Aerococcus urinaeequi strain T43]
ATGGCAAAAATTTTTGAAGTAAAACCTAGAAATGAAGTAGACAGTGCGTTTCAATGGGATTTAACCAGTATCTTCCCAGA
TGATCAAGCTTTTGAGAATTCCTTAAGTGGATTCCCAAAAAAAGCGGATGCTTTTCAAGACTATAAAGGCACTCTAGATC
AAGGCGCTGACCAAGTGGTAACCGTATTAGAGTCCTTATTAGCGGTGAGCCGTGAATTGGAATCCCTATACGTTTATGCA
CATTTAAAACATGACCAAGATACTGGCGACAACAAGTACCTAACTTACAACAGTCAAGCAGGTGCCTTACTTGCTCAAGT
TAGTGAAAAGATCTCTTGGTTTGAACCAGAAGTATTAGCAGTATCTGAAGATGTACAAAAAACTTTGGAAGACCACTCTG
AATACGGTCACTTCTTCCGTGAGTTATTTGCGAAGAAGGCGCATGTCTTATCACCAAGTGAAGAGGCTTTACTTGCTGGT
GCTAGCGAAATATTTGGTGTCTCTTCAACAACTTTCTCACTTTTAAACAATGCCGACTTAAAATTCGGTAAAGTCAAAGA
TGAAGAGGGCAATGATGTTACCCTTTCTCACGGTTCATACGGTGTCCTACTAGAAAGTGCAGACCGTTCTGTTCGAGAAA
ATGCCTTTAAACAACTTTATGCAACTTATGAAGGGGTTAAAAATACCAACGCTTCATTGATGTCAGGTAATATTAAAGGA
CATAATTATACGGCTAAAATTCGTCACTACGATTCAGCACGTCAAAAAGCTTTAGACAACAACAATATTCCAGAAAGTGT
TTATGACACATTAGTCGATACAGTAAGAAAGAATACAAATCTATTACATGAATATGTTGCCTTAAGAAAAGACATGCTAG
GTCTTGATGACTTACAAATGTGGGATATGTATACACCATTAACAGGTGATGCACCGGTGAAATTTACTTACGAAGAAGCT
AAAGAGATTACATTTAAGGCTTTAGCGCCTTTAGGTGACCAATACTTGAAAGACTTGGCCAAAGCCTTTGACGAGAAATG
GATCGATGTTTATGAAAATGAAGGTAAGCGTTCAGGAGCATACTCATCAGGTGCATATGATACCAACCCATATATCTTAC
TAAACTGGCAAGATTCATTGAATGACTTGTATACATTAGTTCATGAGTTAGGTCACTCAATGCACTCTTATTACACTAGA
AGTAACCAACCATACGTATATGGGGACTACTCAATTTTCGTAGCAGAAATTGCCTCTACGACAAACGAAAACTTATTAAC
TTCATATTTACTAGATACAATTGAAGATAAGGATGCACAAATCTATATCTTGAACCACTATCTTGATGGGGTAAAAGGGA
CAATCTTCCGTCAAACTCAGTTTGCTGAATTTGAAAAATTCATGCATGAATCGGATGCAAACGGGCAACCTTTAACAGCC
GACTTCCTAAGTGAAAACTACTTTGAATTAAACAAGGCCTACTACGGTCCGTCAATCGGAGAGGATAAAACAATCGCTTT
AGAATGGTCTCGTATTCCTCACTTCTACATGAACTACTATGTTTACCAATATGCAACAGGATTCTCTGCTGCCAACACAT
TGGCTAAACGTTTAGTAGAAGGTGAAGAGGGTGCCGTTGACAAGTACTTAACTTATTTGAAATCAGGTTCATCTGATTTC
CCAATTAATGTTATGCAAAAAGCGGGTATCGATATGACCAATGCCACTTATATCGAAGAAACCTTTGCCCAATTCGAGCA
AAGATTAGCTGAACTAAAAGACTTATTAAACAAATAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(123-182)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KTD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.168

99.666

0.5