Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   IMX20_RS00040 Genome accession   NZ_CP063065
Coordinates   9661..10212 (+) Length   183 a.a.
NCBI ID   WP_003142907.1    Uniprot ID   A0A7M1KS45
Organism   Aerococcus urinaeequi strain T43     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4661..15212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMX20_RS00030 (IMX20_00030) gyrA 6580..9159 (+) 2580 WP_197558502.1 DNA gyrase subunit A -
  IMX20_RS00035 (IMX20_00035) rpsF 9322..9624 (+) 303 WP_003142910.1 30S ribosomal protein S6 -
  IMX20_RS00040 (IMX20_00040) ssb 9661..10212 (+) 552 WP_003142907.1 single-stranded DNA-binding protein Machinery gene
  IMX20_RS00045 (IMX20_00045) rpsR 10239..10475 (+) 237 WP_003142905.1 30S ribosomal protein S18 -
  IMX20_RS00050 (IMX20_00050) - 10537..10917 (-) 381 WP_026465543.1 VOC family protein -
  IMX20_RS00055 (IMX20_00055) - 11076..12143 (-) 1068 WP_197558503.1 iron-containing alcohol dehydrogenase family protein -
  IMX20_RS00060 (IMX20_00060) - 12221..13255 (-) 1035 WP_197558504.1 branched-chain amino acid aminotransferase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20128.56 Da        Isoelectric Point: 4.4023

>NTDB_id=492656 IMX20_RS00040 WP_003142907.1 9661..10212(+) (ssb) [Aerococcus urinaeequi strain T43]
MINNVVLVGRLTRDVDVRYTQSGVAVGSFSVAVERNFKNAQGERETDFINCVIWRKAAENFARFTRKGSLVGVEGSIQTR
NYENNQGQRVYVTEILVDNFSLLESKSVTESRPASDNNNNSGFGGFNNNNANNNSYNNQNADPFDGNSFNQNSSSFNNGN
DNPFPSSNDGSGSINVTDDDLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=492656 IMX20_RS00040 WP_003142907.1 9661..10212(+) (ssb) [Aerococcus urinaeequi strain T43]
ATGATTAATAATGTTGTACTGGTCGGCCGTTTAACTCGTGACGTTGATGTGCGTTATACGCAAAGTGGCGTTGCCGTTGG
ATCTTTCAGCGTTGCCGTTGAAAGAAACTTTAAAAATGCCCAAGGTGAACGTGAGACAGATTTTATTAACTGTGTTATCT
GGCGTAAAGCAGCAGAGAATTTTGCGCGTTTTACCCGTAAAGGTTCATTAGTAGGTGTTGAAGGCAGCATCCAAACTCGA
AACTACGAGAATAACCAAGGACAACGTGTATACGTTACTGAGATTTTGGTTGATAACTTTAGTTTATTAGAATCAAAATC
AGTTACTGAAAGCCGCCCTGCCTCTGATAATAATAATAACAGTGGTTTTGGTGGATTTAATAACAATAACGCAAACAACA
ACAGCTATAACAATCAAAATGCTGATCCATTTGATGGAAACAGCTTTAATCAAAACTCCTCTTCATTTAACAATGGTAAC
GATAACCCATTCCCATCATCTAATGATGGTTCTGGTTCAATCAATGTTACCGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7M1KS45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.47

100

0.585
  ssbA Bacillus subtilis subsp. subtilis str. 168

51.366

100

0.514