Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IMZ92_RS04125 Genome accession   NZ_CP063064
Coordinates   927823..929184 (+) Length   453 a.a.
NCBI ID   WP_080122191.1    Uniprot ID   -
Organism   Chlamydia suis strain S45 RIF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 922823..934184
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IMZ92_RS04100 (IMZ92_04095) accD 922890..923817 (-) 928 Protein_778 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  IMZ92_RS04105 (IMZ92_04100) - 923888..924508 (-) 621 WP_080122328.1 superoxide dismutase -
  IMZ92_RS04110 (IMZ92_04105) - 924641..926422 (-) 1782 WP_080122188.1 phospho-sugar mutase -
  IMZ92_RS04115 (IMZ92_04110) - 926569..927036 (-) 468 WP_080122189.1 DUF5070 domain-containing protein -
  IMZ92_RS04120 (IMZ92_04115) rnc 927144..927839 (+) 696 WP_219664369.1 ribonuclease III -
  IMZ92_RS04125 (IMZ92_04120) radA 927823..929184 (+) 1362 WP_080122191.1 DNA repair protein RadA Machinery gene
  IMZ92_RS04130 (IMZ92_04125) - 929162..929917 (+) 756 WP_080141444.1 hydroxymethylbilane synthase -
  IMZ92_RS04135 (IMZ92_04130) - 929991..930548 (+) 558 WP_080141445.1 hypothetical protein -
  IMZ92_RS04140 (IMZ92_04135) - 930608..930952 (+) 345 WP_219664372.1 hypothetical protein -
  IMZ92_RS04145 (IMZ92_04140) pknD 931039..933831 (-) 2793 WP_080122195.1 serine/threonine-protein kinase PknD -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49657.30 Da        Isoelectric Point: 8.3179

>NTDB_id=492654 IMZ92_RS04125 WP_080122191.1 927823..929184(+) (radA) [Chlamydia suis strain S45 RIF]
MTTKTKTLWGCTTCGSYSPKWLGQCPGCLHWNTLVEEKLPYKPNTTSLPSSTAPIPLNTVEFQEEIRLYTRAPGWNRLLG
GGTVRGSLTLLGGEPGIGKSTLLLQISSQFAKQGYSVLYVCGEESVSQTSLRAQRLNISSSNIFLFPETNLDDIKRQITN
LTPDILVIDSIQIIFSPSLSSAPGSVAQVRETTAELMHLAKQKQITTFIIGHVTKSGDIAGPRILEHLVDTVLYFEGNAH
ANYRMIRSVKNRFGPTNELLILAMQTNGLREVENPSGLFLQEKIVETTGSTIIPIVEGSETLLVEMQALVSSSPFSNPVR
KTSGFDPNRFSLLLAVLEKRANVKLYTSDVFLSIAGGLKISQPSADLGAVLSVVSSLYNRFLPKNYTYTGEIGLGGEIRH
VTHIESRIKESILMGFKGIVLPFGQMKGLPEEFLDQIDIIGVKTIKDAVRLLQ

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=492654 IMZ92_RS04125 WP_080122191.1 927823..929184(+) (radA) [Chlamydia suis strain S45 RIF]
ATGACAACAAAAACTAAAACACTATGGGGTTGTACGACATGCGGCTCTTATTCTCCAAAATGGCTAGGACAATGTCCTGG
GTGTCTTCACTGGAATACTTTGGTCGAAGAAAAACTTCCTTATAAACCAAACACCACGTCCCTACCCAGCTCCACAGCCC
CAATACCTCTAAACACTGTAGAATTTCAGGAAGAGATCCGACTGTATACTCGTGCTCCAGGATGGAATCGCCTTCTTGGA
GGAGGGACTGTTCGCGGTAGTTTAACCCTGCTAGGAGGAGAGCCCGGTATTGGAAAATCCACCCTATTGCTTCAAATTTC
TTCTCAATTTGCCAAACAAGGCTATTCAGTATTGTATGTTTGTGGGGAAGAATCCGTGTCCCAAACTTCATTACGCGCAC
AACGACTAAACATCTCTAGCAGCAATATTTTTCTATTCCCAGAAACAAACTTAGACGATATCAAACGACAGATCACAAAT
CTTACTCCAGATATCTTAGTCATAGATTCTATTCAGATCATTTTTTCTCCATCTCTAAGCTCTGCTCCAGGATCTGTTGC
CCAAGTCAGGGAGACCACAGCAGAACTTATGCATCTCGCGAAACAAAAACAGATAACGACCTTTATTATTGGGCACGTTA
CCAAATCAGGAGACATCGCAGGACCTCGTATTCTTGAACATTTAGTAGATACAGTCCTTTATTTCGAAGGCAATGCACAT
GCCAATTATCGCATGATCCGCTCCGTAAAAAACCGCTTCGGCCCAACTAACGAGTTACTGATTCTTGCCATGCAGACAAA
TGGATTACGTGAAGTAGAAAATCCTTCGGGACTTTTTTTACAAGAAAAAATTGTAGAAACAACCGGCTCTACCATTATTC
CTATTGTAGAGGGATCAGAAACGCTTCTTGTCGAAATGCAAGCGCTTGTTTCCTCATCTCCATTCTCAAACCCCGTACGA
AAAACTTCTGGATTTGACCCCAACCGGTTCTCTTTGCTCTTAGCGGTTTTAGAAAAAAGAGCAAATGTTAAATTATACAC
TTCCGATGTCTTTCTCTCTATAGCAGGAGGTTTAAAAATCTCACAACCTTCAGCAGATTTGGGAGCGGTGCTATCGGTCG
TTTCTTCCCTATATAATCGCTTTTTACCTAAAAACTATACCTATACTGGGGAAATCGGACTGGGAGGGGAGATTCGGCAC
GTTACACACATAGAATCCCGCATAAAAGAGAGTATTCTTATGGGATTTAAAGGCATTGTTCTGCCTTTCGGGCAAATGAA
AGGTTTACCTGAAGAATTTTTGGATCAAATTGACATTATTGGAGTAAAAACAATCAAAGATGCTGTCCGCTTATTACAAT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(69-217)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(360-450)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.465

100

0.488
  radA Streptococcus pneumoniae Rx1

47.566

99.779

0.475
  radA Streptococcus pneumoniae D39

47.566

99.779

0.475
  radA Streptococcus pneumoniae R6

47.566

99.779

0.475
  radA Streptococcus pneumoniae TIGR4

47.566

99.779

0.475
  radA Streptococcus mitis NCTC 12261

47.345

99.779

0.472
  radA Streptococcus mitis SK321

47.111

99.338

0.468