Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   INP83_RS04505 Genome accession   NZ_CP063061
Coordinates   1029314..1030753 (-) Length   479 a.a.
NCBI ID   WP_146269325.1    Uniprot ID   A0A563UAY0
Organism   Mucilaginibacter sp. 21P     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024314..1035753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP83_RS04485 (INP83_04470) - 1024514..1025746 (+) 1233 WP_219126458.1 peroxiredoxin -
  INP83_RS04490 (INP83_04475) - 1025891..1026865 (+) 975 WP_219126459.1 lysylphosphatidylglycerol synthase domain-containing protein -
  INP83_RS04495 (INP83_04480) - 1026849..1027979 (+) 1131 WP_219126460.1 glycosyltransferase -
  INP83_RS04500 (INP83_04485) - 1028072..1029310 (+) 1239 WP_219126461.1 PP2C family protein-serine/threonine phosphatase -
  INP83_RS04505 (INP83_04490) radA 1029314..1030753 (-) 1440 WP_146269325.1 DNA repair protein RadA Machinery gene
  INP83_RS21325 (INP83_04495) - 1030890..1031099 (+) 210 WP_222431538.1 GIY-YIG nuclease family protein -
  INP83_RS04515 (INP83_04500) - 1031412..1032962 (-) 1551 WP_146269324.1 Rne/Rng family ribonuclease -
  INP83_RS04520 (INP83_04505) - 1033200..1034045 (-) 846 WP_146269323.1 tetratricopeptide repeat protein -
  INP83_RS04525 (INP83_04510) - 1034052..1034354 (-) 303 WP_146269322.1 HU family DNA-binding protein -
  INP83_RS04530 (INP83_04515) mutY 1034530..1035573 (+) 1044 WP_146269321.1 A/G-specific adenine glycosylase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52797.70 Da        Isoelectric Point: 6.5900

>NTDB_id=492638 INP83_RS04505 WP_146269325.1 1029314..1030753(-) (radA) [Mucilaginibacter sp. 21P]
MAKTKIAYFCQSCGYESPKWLGKCPSCQQWNTFVEEILEKGNASVPTWKTNSASTSMQRANKPVEVADITFREEHRLLTP
DKEFNRVLGGGIVAGSLVLIGGEPGIGKSTLMLQLALNMPNVKVLYVSGEESDHQIKMRAERLRESEKSKVKSLKSEDEK
GCFILTETSTQNIFKQIEELQPDVLVIDSIQTLHSAHVESTPGSVSQVRECTAELLRFAKETSTPVFLIGHITKDGMIAG
PKILEHMVDTVLQFEGDRHHVYRILRTIKNRFGSSSELGIYEMQGEGLREVSNPSEILLSQREDGLSGITISATLEGMRP
MLIETQALVSASPYGTPQRTATGFDTKRMSMLLAVLEKRCGFRLGAKDVFLNITGGIRVEDPAIDLGLAAAIISSHEDIP
ISAKVCFAGEIGLSGEIRAVNRVEQRIAEAQKLGFEQIFISKYNMPSAAKDKGKLDLSRYTIDVKPVGRIEEVFGLLFG

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=492638 INP83_RS04505 WP_146269325.1 1029314..1030753(-) (radA) [Mucilaginibacter sp. 21P]
ATGGCTAAAACCAAGATCGCTTATTTCTGCCAGAGCTGTGGCTACGAGTCGCCTAAATGGCTGGGCAAGTGCCCAAGCTG
CCAGCAATGGAATACTTTTGTTGAAGAAATACTGGAGAAAGGTAACGCAAGTGTCCCTACCTGGAAAACCAATAGTGCTT
CTACATCTATGCAGCGCGCCAATAAGCCGGTTGAGGTAGCAGATATCACCTTTAGGGAAGAGCATCGCTTGCTTACACCT
GATAAGGAGTTTAACCGTGTTTTAGGCGGTGGCATTGTTGCGGGCTCGTTAGTGCTGATAGGTGGTGAGCCGGGCATTGG
TAAATCAACCCTGATGCTGCAACTTGCCTTGAATATGCCGAATGTGAAGGTACTGTATGTATCAGGAGAGGAGAGCGATC
ACCAGATAAAAATGAGGGCGGAGCGCTTGCGCGAAAGTGAAAAGTCAAAAGTCAAAAGTCTGAAGTCTGAAGACGAAAAA
GGCTGTTTTATATTGACAGAAACTTCTACCCAAAATATATTTAAACAGATAGAAGAATTACAGCCCGATGTATTGGTGAT
AGATTCGATACAAACTTTGCACTCTGCACATGTTGAATCTACTCCCGGCAGCGTTTCGCAGGTAAGGGAGTGTACGGCAG
AGCTGCTGCGCTTTGCCAAAGAGACATCAACCCCTGTTTTCCTGATAGGCCACATTACTAAGGACGGTATGATAGCCGGC
CCCAAAATATTGGAACACATGGTAGACACAGTTCTGCAGTTTGAGGGTGACCGCCACCATGTGTACCGCATTCTGCGCAC
TATTAAAAACCGTTTTGGTTCATCATCTGAATTGGGTATTTATGAGATGCAAGGCGAGGGTTTGCGTGAGGTATCCAACC
CATCAGAAATTTTACTATCGCAGCGCGAGGATGGTTTAAGCGGTATTACCATATCGGCCACATTAGAAGGCATGAGGCCG
ATGCTGATAGAAACCCAGGCTTTAGTGAGTGCATCGCCGTACGGCACACCACAACGTACGGCAACCGGCTTTGATACCAA
ACGTATGAGCATGCTGCTTGCCGTATTGGAGAAACGCTGCGGTTTCCGTTTGGGTGCTAAGGATGTATTCCTGAATATAA
CCGGCGGCATCCGTGTAGAAGACCCGGCCATCGATCTGGGATTGGCGGCGGCCATCATTTCTTCACATGAGGATATCCCG
ATCTCGGCTAAGGTTTGCTTTGCAGGTGAGATAGGATTATCGGGCGAGATTCGTGCGGTTAACCGCGTAGAGCAACGTAT
TGCAGAAGCTCAAAAGCTTGGTTTTGAACAGATCTTTATATCCAAATATAATATGCCATCTGCAGCAAAAGACAAAGGTA
AACTCGACCTCTCGCGTTACACTATCGATGTAAAACCGGTTGGCCGGATAGAGGAAGTATTTGGGCTGTTGTTTGGCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-237)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(358-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A563UAY0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.088

94.99

0.495
  radA Streptococcus mitis NCTC 12261

48.852

100

0.489
  radA Streptococcus pneumoniae Rx1

50.673

93.111

0.472
  radA Streptococcus pneumoniae D39

50.673

93.111

0.472
  radA Streptococcus pneumoniae R6

50.673

93.111

0.472
  radA Streptococcus pneumoniae TIGR4

50.673

93.111

0.472
  radA Streptococcus mitis SK321

50.673

93.111

0.472