Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   INP81_RS20120 Genome accession   NZ_CP063057
Coordinates   4383455..4383859 (-) Length   134 a.a.
NCBI ID   WP_003071158.1    Uniprot ID   A0A5S4T294
Organism   Comamonas thiooxydans strain ZDHYF418     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4378455..4388859
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  INP81_RS20105 (INP81_20105) - 4380287..4382530 (-) 2244 WP_012839727.1 methyl-accepting chemotaxis protein -
  INP81_RS20110 (INP81_20110) - 4382550..4383077 (-) 528 WP_003071161.1 chemotaxis protein CheW -
  INP81_RS20115 (INP81_20115) - 4383093..4383455 (-) 363 WP_003071159.1 response regulator -
  INP81_RS20120 (INP81_20120) pilG 4383455..4383859 (-) 405 WP_003071158.1 response regulator Regulator
  INP81_RS20125 (INP81_20125) - 4383910..4384062 (-) 153 WP_034399566.1 rubredoxin -
  INP81_RS20130 (INP81_20130) thiD 4384178..4385146 (+) 969 WP_012839730.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  INP81_RS20135 (INP81_20135) hemL 4385130..4386434 (+) 1305 WP_054075489.1 glutamate-1-semialdehyde 2,1-aminomutase -
  INP81_RS20140 (INP81_20140) - 4386597..4388369 (+) 1773 WP_054075501.1 alkaline phosphatase D family protein -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 14667.90 Da        Isoelectric Point: 6.9230

>NTDB_id=492628 INP81_RS20120 WP_003071158.1 4383455..4383859(-) (pilG) [Comamonas thiooxydans strain ZDHYF418]
MTASGAPLRVLVVDDSNTIRRSAEIFLKQGGHEVLLADDGFDALSKVNDYQPQLIFCDILMPKLDGYQTCAIIKRNARFA
NTPVVMLSSKDGVFDKARGRMVGCQDYLTKPFTKDQLLQAVQQFALQAADVGAA

Nucleotide


Download         Length: 405 bp        

>NTDB_id=492628 INP81_RS20120 WP_003071158.1 4383455..4383859(-) (pilG) [Comamonas thiooxydans strain ZDHYF418]
GTGACAGCATCTGGTGCGCCTTTGCGCGTTCTGGTCGTGGATGACAGCAACACCATCCGCCGCAGCGCTGAAATTTTCCT
CAAGCAAGGTGGTCACGAAGTTCTTCTTGCCGACGATGGCTTCGATGCCCTGTCCAAGGTCAATGACTACCAGCCCCAGC
TCATCTTCTGCGACATTCTGATGCCCAAACTCGATGGCTATCAGACCTGCGCCATCATCAAGCGCAATGCTCGCTTTGCC
AATACGCCCGTCGTGATGCTGTCATCCAAGGACGGCGTATTCGACAAGGCTCGCGGTCGCATGGTGGGCTGCCAGGACTA
TCTGACCAAACCGTTTACCAAAGATCAATTGCTGCAAGCCGTACAACAATTCGCGCTGCAAGCTGCAGATGTGGGAGCTG
CATGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5S4T294

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

58.621

86.567

0.507