Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   IHV77_RS09000 Genome accession   NZ_CP063056
Coordinates   1904543..1905496 (+) Length   317 a.a.
NCBI ID   WP_194811634.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1899543..1910496
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS08980 (IHV77_08980) accA 1900126..1901073 (-) 948 WP_194811630.1 acetyl-CoA carboxylase carboxyl transferase subunit alpha -
  IHV77_RS08985 (IHV77_08985) znuB 1901162..1901947 (-) 786 WP_194811631.1 zinc ABC transporter permease subunit ZnuB -
  IHV77_RS08990 (IHV77_08990) znuC 1901947..1902750 (-) 804 WP_194811632.1 zinc ABC transporter ATP-binding protein ZnuC -
  IHV77_RS08995 (IHV77_08995) mepM 1902925..1904385 (+) 1461 WP_194811633.1 murein DD-endopeptidase MepM -
  IHV77_RS09000 (IHV77_09000) ceuB 1904543..1905496 (+) 954 WP_194811634.1 ABC transporter permease Machinery gene
  IHV77_RS09005 (IHV77_09005) - 1905489..1906442 (+) 954 WP_194811635.1 iron chelate uptake ABC transporter family permease subunit -
  IHV77_RS09010 (IHV77_09010) - 1906459..1907226 (+) 768 WP_194811636.1 ABC transporter ATP-binding protein -
  IHV77_RS09015 (IHV77_09015) - 1907236..1908150 (+) 915 WP_194811637.1 siderophore ABC transporter substrate-binding protein -
  IHV77_RS09020 (IHV77_09020) - 1908270..1909226 (+) 957 WP_194811638.1 sigma 54-interacting transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34863.12 Da        Isoelectric Point: 10.2252

>NTDB_id=492613 IHV77_RS09000 WP_194811634.1 1904543..1905496(+) (ceuB) [Rodentibacter haemolyticus strain DSM 111151]
MIKRRYLILLLFVLSVVSLFLGVSSVNLQGLLNFEGNQWQIFAISRVPRLISILIAGTSLSICGLVMQQLSRNRFVSPTT
AGTMDSARLGILIVMLFFPSASMLLKTGIAVAVSFLGTLLFMFILSRLKFKDTIFVPLVGIMFGNIISAITAFIAYQQDV
LQNLSGWLQGDFSLVMAGRYELLYFSIPMLVVAYLFANRFSIVGMGKDFAVNLGLNYNLVLYIGLLIVSVVSSIIIISVG
VIPFLGLIIPNIVTLYLGDNLKKVLSHTALLGAVFVLFCDILGRAVIYPYEISINVVVGVFGSGIFLFLLLKRYRNA

Nucleotide


Download         Length: 954 bp        

>NTDB_id=492613 IHV77_RS09000 WP_194811634.1 1904543..1905496(+) (ceuB) [Rodentibacter haemolyticus strain DSM 111151]
ATGATCAAGCGACGTTACCTGATTCTTCTTCTCTTTGTGCTTTCGGTTGTTTCACTTTTCCTCGGTGTGAGTTCTGTCAA
TTTACAGGGCTTACTAAATTTTGAAGGCAATCAGTGGCAGATTTTTGCTATAAGTCGAGTGCCTCGATTAATCAGTATTT
TGATCGCCGGCACGTCTTTGAGTATTTGCGGTTTGGTAATGCAGCAGTTAAGCCGAAACCGTTTTGTTTCTCCCACGACG
GCAGGTACGATGGATAGCGCCCGACTTGGTATTTTAATTGTCATGTTGTTTTTTCCTTCGGCTTCAATGTTATTGAAAAC
CGGTATTGCCGTAGCCGTGTCATTTCTCGGCACGTTGTTGTTTATGTTCATTCTTTCCCGCTTGAAGTTTAAAGATACGA
TTTTTGTCCCCCTTGTTGGGATTATGTTTGGCAATATCATTAGTGCGATTACGGCGTTTATCGCTTATCAGCAAGATGTG
TTACAAAATCTTTCCGGCTGGTTACAAGGGGATTTTTCATTAGTGATGGCAGGACGATATGAATTACTTTATTTCAGCAT
TCCTATGCTGGTTGTCGCTTATCTGTTTGCCAATCGTTTTTCTATTGTCGGTATGGGCAAGGATTTTGCCGTAAATTTAG
GTTTAAATTACAACTTGGTCTTGTACATCGGCTTGTTAATCGTGTCGGTTGTTTCTTCTATCATTATTATTTCAGTGGGC
GTGATTCCGTTCCTCGGTCTGATTATCCCTAATATCGTTACACTTTATTTAGGCGATAATCTAAAAAAGGTGCTTTCGCA
CACTGCTTTGCTCGGCGCGGTATTTGTTCTGTTTTGTGATATTTTAGGTAGAGCGGTGATTTATCCTTATGAAATATCTA
TTAATGTGGTAGTAGGCGTTTTTGGTAGTGGGATTTTCTTATTTTTATTGTTGAAGCGGTATCGAAATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.272

98.738

0.546