Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   IHV77_RS06190 Genome accession   NZ_CP063056
Coordinates   1281286..1281948 (-) Length   220 a.a.
NCBI ID   WP_194811138.1    Uniprot ID   -
Organism   Rodentibacter haemolyticus strain DSM 111151     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1276286..1286948
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IHV77_RS06190 (IHV77_06190) sxy/tfoX 1281286..1281948 (-) 663 WP_194811138.1 TfoX/Sxy family DNA transformation protein Regulator
  IHV77_RS06195 (IHV77_06195) - 1282485..1282913 (-) 429 WP_194811139.1 F0F1 ATP synthase subunit epsilon -
  IHV77_RS06200 (IHV77_06200) atpD 1282944..1284317 (-) 1374 WP_194811140.1 F0F1 ATP synthase subunit beta -
  IHV77_RS06205 (IHV77_06205) atpG 1284335..1285204 (-) 870 WP_194811141.1 F0F1 ATP synthase subunit gamma -
  IHV77_RS06210 (IHV77_06210) atpA 1285222..1286763 (-) 1542 WP_194811142.1 F0F1 ATP synthase subunit alpha -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25324.94 Da        Isoelectric Point: 10.1403

>NTDB_id=492600 IHV77_RS06190 WP_194811138.1 1281286..1281948(-) (sxy/tfoX) [Rodentibacter haemolyticus strain DSM 111151]
MSYLNIKNEHLTETCNLVNGLIGNVSSKNLFTGYGLFYKQELMFGLWLNGKIYLQAKDKLAEQLISMGCIPFTKNEVDAK
FVLSDYYWLSNNILGDKILLRKLLMISIKQIQDRKNELELLKANRLKDLPNLSIKHERMLKKVGIHDVKTFRAVGAENAI
VRLKKLGIPATLQTYWKLSCALLNINSEQLTKAQKEILLKKLNKALHEAGLRMYRKIDDE

Nucleotide


Download         Length: 663 bp        

>NTDB_id=492600 IHV77_RS06190 WP_194811138.1 1281286..1281948(-) (sxy/tfoX) [Rodentibacter haemolyticus strain DSM 111151]
ATGTCATACTTAAATATTAAAAATGAACACCTTACTGAAACTTGTAATTTAGTTAATGGGTTGATTGGAAATGTTTCATC
AAAAAACCTTTTCACCGGTTATGGGCTATTCTATAAACAGGAACTTATGTTCGGTTTATGGCTGAATGGAAAAATTTATC
TTCAAGCTAAAGATAAACTGGCTGAGCAATTGATAAGTATGGGATGCATACCATTTACAAAAAATGAGGTGGATGCCAAA
TTTGTTCTGTCTGATTATTACTGGCTTTCTAATAATATACTCGGTGATAAAATCTTGCTACGTAAGTTGTTAATGATCTC
GATTAAACAGATTCAAGATAGGAAAAATGAGCTTGAATTACTAAAGGCGAACCGTTTAAAGGATCTTCCTAACCTTTCTA
TAAAGCACGAAAGAATGTTAAAGAAGGTAGGCATTCACGATGTTAAAACTTTTCGAGCTGTTGGCGCTGAAAATGCGATT
GTTAGGCTAAAAAAGTTAGGTATTCCGGCAACATTACAAACTTATTGGAAATTATCTTGCGCGTTATTAAACATAAATAG
TGAGCAGTTAACTAAGGCGCAAAAGGAAATTTTATTAAAAAAATTAAATAAGGCGTTGCATGAAGCCGGGCTTAGAATGT
ATCGAAAGATTGATGATGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(123-201)

TfoX N-terminal domain (TfoX_N)

(22-110)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

58.525

98.636

0.577